HsaINT0176415 @ hg38
Intron Retention
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:HGNC Symbol;Acc:HGNC:15698]
Coordinates
chr1:154552093-154552464:-
Coord C1 exon
chr1:154552404-154552464
Coord A exon
chr1:154552184-154552403
Coord C2 exon
chr1:154552093-154552183
Length
220 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCAGGCTTGTTGCTTCTTAGAGT
3' ss Score
6.11
Exon sequences
Seq C1 exon
GAAACTATGCAGTCGAACTCGTGAATGACAGTCTGTATGATTGGAATGTCAAACTCCTCAA
Seq A exon
GTGAGTGGGGACTCTGGGATTGGAGAGGAAGTTGAGGAGGAGTGTGAGTGGGGCTACTGTGGTGGGATCTCCAGGGCAGCCCCATCCAGCATTTTCATTCAGGGTCCCGGAGCGGGTGTGGGCAGTGGTTTCGTGGTCTGCTGCCAGCCAGGGCAGGGGAGCCCTTATGAAGCTCCTGAGGTGGAACCAGGCATCTGAGCCCAGGCTTGTTGCTTCTTAG
Seq C2 exon
AGTTGACCAGGACAGCGCTTTGCACAACGATCTCCAGATCCTCAAAGAGAAAGAAGGAGCCGACTTCATTCTACTTAACTTTTCCTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714:ENST00000292211:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017921=UQ_con=PU(11.9=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTATGCAGTCGAACTCGTGA
R:
AGTTAAGTAGAATGAAGTCGGCTCC
Band lengths:
140-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains