BtaINT0156226 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16086036-16086383:+
Coord C1 exon
chr3:16086036-16086096
Coord A exon
chr3:16086097-16086292
Coord C2 exon
chr3:16086293-16086383
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTAAACTGGTTGCTTCCTAGAGT
3' ss Score
5.54
Exon sequences
Seq C1 exon
GAAACTACGCAGTCGAACTCGTGAATGACAGTCTGTATGATTGGAATGTCAAACTCCTCAA
Seq A exon
GTAAGTGGTGGGTGTGGGGCTGGAAAGGAAGTTGAGTAGTGAGTGCAGTTACCGTGGTGGGAGTCTCCAGGGCCAGCCGTCCTGGGGGCGGGTGTGGGCAGTGGCTTGGCCCTCTGCTGCTTGCCCCAGAGGGCAGTGGGAGCCTCAAGGCTCCTGACTTAGACCCAGAGCTGAGCCTAAACTGGTTGCTTCCTAG
Seq C2 exon
AGTTGACCAGGACAGCGCTTTGCACAACGATCTCCAGATCCTCAAAGAGAAAGAAGGAGCCGACTTCATCCTACTTAACTTTTCTTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515:ENSBTAT00000009889:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017921=UQ_con=PU(11.9=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTACGCAGTCGAACTCGT
R:
AGAAAAGTTAAGTAGGATGAAGTCGG
Band lengths:
146-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]