MmuINT0169155 @ mm10
Intron Retention
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89780437-89780777:+
Coord C1 exon
chr3:89780437-89780497
Coord A exon
chr3:89780498-89780686
Coord C2 exon
chr3:89780687-89780777
Length
189 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCAGACTCGTTGCTTTGTAGAGT
3' ss Score
4.48
Exon sequences
Seq C1 exon
GAAACTATGCAGTCGAACTCGTGAATGACAGTCTCTATGACTGGAATGTCAAACTCCTCAA
Seq A exon
GTGAGTGGCAGCTCTGGGATGAGAAGGGTTGAGGGAGCCACATGAGTGGAGTGACTGGTGGAGCCCTAGGGCCAGTCCTGTCCCTTTCAGTGTGTTGTGGGATCCTAGGAGCAGGTGTGGGCAGTGGAACCCTCAGGAGACTGCTTGGTCAGTACCTGGCAGGCTGAGCCCAGACTCGTTGCTTTGTAG
Seq C2 exon
AGTTGACCAGGATAGCGCTTTGCACAATGATCTTCAGATCCTGAAGGAGAAGGAAGGAGCAGACTTCATCCTACTTAACTTCTCCTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572:ENSMUST00000038356:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017921=UQ_con=PU(11.9=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTATGCAGTCGAACTCGTGA
R:
AGGAGAAGTTAAGTAGGATGAAGTCT
Band lengths:
146-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types