GgaINT0026870 @ galGal3
Intron Retention
Gene
ENSGALG00000002989 | UBE2Q2
Description
NA
Coordinates
chr10:4445990-4448441:-
Coord C1 exon
chr10:4448381-4448441
Coord A exon
chr10:4446081-4448380
Coord C2 exon
chr10:4445990-4446080
Length
2300 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCACCCTGCCTCTCTTATAGGGT
3' ss Score
10.8
Exon sequences
Seq C1 exon
GGATATATTCAGTGGAACTGGTAAATGACAGCTTGTATGAATGGCATGTTAAGCTTCTAAA
Seq A exon
GTAAGTTCTTAAACTTCTTTCATTTTTCTGAAGAATCTACTAAAATTGCTGCAAAAAATCTGGTTTTGAATGAGAAACTCTAGTCAGAACCTACAAAATAGTGTGGCTACAACTTGGCTAGATGGAGATGCATGCAGATATTGAACTATAGTAATTAAGTTGATAACAAATAAAAATGAAAAAAAAAAAAAACCAAAAACCCAGACACTCCTTGCACTGCCAAGTCTCTGCGTATTACCATAACTTTTATTACTGTTTCACCTTCCTTCCAATGCTACTCCAAAATATGAAACCTCAAATGATGAAATGAGTTGTCCAGAAGTTTTGTCTGGGTGGACTTGTTTGTTTTTAATTTCAATAAAATGCAGGTTCTCGTTTCCTTTAAGACATAAGAAGGAACAGAACTGTTCTAGTGGGGTTAGTTTAGCAGGCACATAGGACTGAAATCTTGAGGCATAACATAATGATGACTTACAACATGATTGTTTTTTCTAATGTGCTACTTTTCACTTGTTTGTACTGGGTCTGGATGATCTCCACACCAATTTAGAAGAAAATGACAGCTCATGTATTGCTATGTCCAAAGTGTAATACTTTAATTCTAAAGGCATTATACTGAAATTAGTCCCAGTAACAGGATTATCTGCCATTATCCTGCGAGGTAACCTGTAGGAAGGAAGAGCCTATGCAACTAGATTGGGTGACTGTGAAAGGTGAAGAGTTGGGAAAAATTCCTTCAGTTCAGCTACATCGTGATGCACAGATACAAAGACTTAAGTTTTATCAGCACAATAGCTAATGTGCCTTTAGGAATTGTTGCCTTGTCCTGGTGGTAAAATCTCTACAGCTTTGTCACCAGCTGCTGAGTTGTATTTCCATCTTAGTGTCATCAGAAGCATATGAACATTCTGAAGCTGAAACTAGCAGGAAGAGTAATCATTCCCTTGTTACAGAATGCCTTAGTGATTGACTGCTTAGACAGCCAAATAATTGTGCAGTGCATGAAATTTCTTTTTGAGTACTGTGAGCAGGTTTGGTTTTCTGAGGAGGGAGAAGCAATAGAATGCATGCAAGAGATGACTTCCAGAATGGCTAAGAAAAGAGATCCGGGGCAATGGGTAATGGCTTTAAACTGAAAGAGAGGGGATGCACATTAGACATGGAGAAGGGATTCTTTACTCAGAAGGAGATGAGGCACTGGCACAGGCTGCGCAGGAAAGCTTTAGGTGTCCCATCCCTGGAGGTGCTGAAGGTCTTGCTCAACCTGGTAGTAGTGGGAGCTGTCCCTGCCCATATAGCTGGGGGCGGAACTGGGTGGACTTCAAGGGCTCTCTCTTCCAAGACAAACCATTCTGCAAAGACAAAGAATTGTGTTTATTTGTTCCAGCAGAAAGTGTCTGTAAACAAATGACCTGTGTGTGCAGACCAGTTGAGGGTGTAAATGTCACAGAGATTAACCCTTTTGCAGACAGAACATTATTGTTACTAGAACAAGTAATTCTGAACTGGCCTGGTGCTGGTTATGGCTGGAATTGATGGGTTGCTCAGCACTGAAAGATTTATATTTTTTTTCTCTGAAATAGCTTTTGATTTGTGAGATGGGGACGTAGGGCTCGGGTAACTCTGAAATGGGTTCTCCAGTTTGTGGCTTCACGTGTAGTAGAGGATTGGACTCTTGTAGTCCCCTTAACATCATCTGTTGTCTTGTTTACAGTCTTCTTTTGACTAGTTTCTTTAAAAACTTCTGGGGTGGCAGTGCTTGCGTTGGATAAACCCAGTAGTGTCTGAATTAACACCCAGCGTGCTTGTCACCAGTATTTTGCAACAAGTGATGAAATTCTGCTGAGAGCAGATACTGCTGACTTCAGTGCTTTGGCAGATGCAGATCACGTTTAACATGTGATATAGAGCTGCAGTCACGTACTCATGAAGGGTTCGCTAACTGTGCTGAAAACAGATCACTACAGCCTTTCCCTTAACATACTTTCTTCTCTTGGGACATAGATTTCCAGTGAGCTGAAGGGAGTTAAAATGACTGATTTTCAAATAAACGGCTTATTTATTTGCTATCCATGTTGAAATAACATTTGATAGTGGTGGGATCGTAGTTCATTGCAACAAGCTTTCATGGAGATCTCGGGGCAAAGTGTTTTCTTTCTCAAAGGAGCAAACATTTTCTTGTGTTTAACTCAAATTACCATTTGTAATCTATAAATACATGAAGGAGCTAAGAGTGATTGCTATTTACAGGTAGTGAAAATACTAACTTAATCCAGGATTTCACCCTGCCTCTCTTATAG
Seq C2 exon
GGTTGATCCTGACAGCCCTCTGCATAGTGATCTTCAGGTCTTAAAAGAAAAAGAAGGTGTAGAATACATTTTACTCAACTTCTCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989:ENSGALT00000004731:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]