DreINT0170691 @ danRer10
Intron Retention
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:28994812-28995052:-
Coord C1 exon
chr25:28994992-28995052
Coord A exon
chr25:28994903-28994991
Coord C2 exon
chr25:28994812-28994902
Length
89 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
GACTCTGTTTGGTTTATAAGGGT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTATCTATTCAGTGGAGCTAGTAAACGATAGCCTGTATGAGTGGCATGTCAAGTTAAGGAC
Seq A exon
GTAAGTATGCTTATCATATAAGAAATAGCGTGTTGAATGATTACAGTTTGAGTCACTAATGTGTAAAATGACTCTGTTTGGTTTATAAG
Seq C2 exon
GGTTGATCCAGACAGTCCCTTACACAGCGACCTACAGGTTTTGAAGGAAAAAGAAGGAATGGACTACATTCTGCTCAATTTCTCTTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990:ENSDART00000155506:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATTCAGTGGAGCTAGTAAACGA
R:
AGAGAAATTGAGCAGAATGTAGTCCA
Band lengths:
143-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]