HsaINT0176427 @ hg38
Intron Retention
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75877961-75879188:+
Coord C1 exon
chr15:75877961-75878021
Coord A exon
chr15:75878022-75879097
Coord C2 exon
chr15:75879098-75879188
Length
1076 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTTGTTTTGTAATTCTTAGGGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGATTTATTCAGTGGAACTCATAAATGACAGTTTATATGACTGGCATGTTAAACTGCAGAA
Seq A exon
GTAAGTGGCTTTTTAATGCTCACCCACTCTTTGCAATGGTAGACTATCACAGTGGAGGTTATTTTCCTTCTAACTTGATACCTTTATACTATGGCTTTTACTTAGAACTTTAGACTTTGTTTCTATAGAAATAGTTCTTAGATTGTTTAAATGAGCTGTTGCTGAGGTCTAATAAGAAAGTGAGAAAGAGGAAGGACAGAAAGAGGGACCAGCTGCGGGATAAAGTGTTTTATGGAGTTAGAGCAGGGGAACTTAAAAACAAAAGTGTATTTAATAACTTCATGAGACTGTGATAACCAGTTTATATTTGAAATATATACAGCACTTTGGGAGACTGAGGTGAGAGGATCTCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACTTCATCTCTACAAAAAAAAAAAAATTAGCCAGGCATGGTGGAGTACACCTGTAGTCCCAGCTACTGGGGGTGGTGGGAGGCTGAGGCAGGAAGATCTTGCACTCCAGACATCAAGGCTGCAGTGAGTCACGATCGTATCACTATATTCCAGCCTGGGCAACAGAATGAGGCACCCGGTCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTGGGGGGAGGTGGGATTCAAATTAGACCTGTATATATAGGACAGTTGTAGACAAATACAGGTTTTTTTAGTGATTTAAGTTTTCATAGTTCTGACCATGGCAAACTTTTCTCCTTGAACCCTTTGGCTAATAATGTAAGTTTAATATGCTTTCCTAAACTTTTTTTGAGTTCTTGAGAAAATTATATTCATGTGACTATTTTCCTTTAGAGTGACTGCAAACTCTGAACTCCTTTACTAGATTAGATTTAGAGTATTATGGTCTCTTTTGGACATTTATTCCCAAGGAGCTGGAACCTATGGTGACCTCTATTTTTCCTGGTGATACAGAGCAGCTTTAGACCTTCTCTTTCTGGAACTTGCCCTAGGTGCTCTATTTTAGCTGTCATACTAGTTCATTTTTGAGTTTAGTTAAAAAAAAAAATCTCTAACTTTTTATTTGAACTGTTTTTTGTTTTGTAATTCTTAG
Seq C2 exon
GGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367:ENST00000267938:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains