BtaINT0156236 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31679326-31680231:+
Coord C1 exon
chr21:31679326-31679386
Coord A exon
chr21:31679387-31680140
Coord C2 exon
chr21:31680141-31680231
Length
754 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTTGTTTTGTAATTCTTAGGGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGATTTATTCAGTGGAACTCATAAATGACAGTTTATATGACTGGCATGTTAAACTGCAGAA
Seq A exon
GTAAGTGCTTTTTTATGCTAACCCACTCTTTTTAATGGTAGACTATCACAATGAGATTTCCTCCCTGCTTAATTTGGTACCTATTTACTATGGCTTCTTCTTAGAACTTTAGATCCTGTTTGTATAGAAGTAGTTCTTAGGTTGTTAAAATGAGCTGTTTCTTGGGCTTAATAAGTAATGAGAAAGCAGGAGGAGGAAAAGAAGGGCCAGCTGTGGGAGAAAGTGTTTCATGGAGTTAGTGAGACAATTAGGAACTATACAAACAAAAGTGTATAAATAACTTGATGAGTTAGTATCCATTGTGTACTCGAAGTAAGAAATGAGGAGATCTTTATATAAACAGTTGTAGACAAATTTAGGTTTTGTTAGTGATTTCACTTGTCCTTGGTAAATTTCTCTCATTGAACCCTTTGTCTAATAATTTAGTTTGAGAGAAGCAGATTAAATTTTTGAGTTCTTGAGAAGACTGTGTACATATGACCCTTTCCTTTAGGATAACTGCTAACTTTGCATGCCATTTGAGAGAAGAGATTTAGAATACTGTGATCTCTTCTTTGGACATTTAATCTCAAGGAATTGGAGACTATAGTAATTTGTTTTTCTAGGGACCATAGAACAACTTTAGACTTTCTCTGTTTGCAACTTACCCTAGGGGCTCTGTTTTTAGCTTTTGGAATGGTTCATTTTTAAAGTTAGTGAGGAAAAAAAATCTGACCTTTTTGTTTGAACTGTTTTTTTGTTTTGTAATTCTTAG
Seq C2 exon
GGTGGATCCTGATAGTCCTTTGCACAGTGATCTTCAGATTTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024:ENSBTAT00000005257:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]