HsaINT0176427 @ hg19
Intron Retention
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76170302-76171529:+
Coord C1 exon
chr15:76170302-76170362
Coord A exon
chr15:76170363-76171438
Coord C2 exon
chr15:76171439-76171529
Length
1076 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTTGTTTTGTAATTCTTAGGGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGATTTATTCAGTGGAACTCATAAATGACAGTTTATATGACTGGCATGTTAAACTGCAGAA
Seq A exon
GTAAGTGGCTTTTTAATGCTCACCCACTCTTTGCAATGGTAGACTATCACAGTGGAGGTTATTTTCCTTCTAACTTGATACCTTTATACTATGGCTTTTACTTAGAACTTTAGACTTTGTTTCTATAGAAATAGTTCTTAGATTGTTTAAATGAGCTGTTGCTGAGGTCTAATAAGAAAGTGAGAAAGAGGAAGGACAGAAAGAGGGACCAGCTGCGGGATAAAGTGTTTTATGGAGTTAGAGCAGGGGAACTTAAAAACAAAAGTGTATTTAATAACTTCATGAGACTGTGATAACCAGTTTATATTTGAAATATATACAGCACTTTGGGAGACTGAGGTGAGAGGATCTCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACTTCATCTCTACAAAAAAAAAAAAATTAGCCAGGCATGGTGGAGTACACCTGTAGTCCCAGCTACTGGGGGTGGTGGGAGGCTGAGGCAGGAAGATCTTGCACTCCAGACATCAAGGCTGCAGTGAGTCACGATCGTATCACTATATTCCAGCCTGGGCAACAGAATGAGGCACCCGGTCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTGGGGGGAGGTGGGATTCAAATTAGACCTGTATATATAGGACAGTTGTAGACAAATACAGGTTTTTTTAGTGATTTAAGTTTTCATAGTTCTGACCATGGCAAACTTTTCTCCTTGAACCCTTTGGCTAATAATGTAAGTTTAATATGCTTTCCTAAACTTTTTTTGAGTTCTTGAGAAAATTATATTCATGTGACTATTTTCCTTTAGAGTGACTGCAAACTCTGAACTCCTTTACTAGATTAGATTTAGAGTATTATGGTCTCTTTTGGACATTTATTCCCAAGGAGCTGGAACCTATGGTGACCTCTATTTTTCCTGGTGATACAGAGCAGCTTTAGACCTTCTCTTTCTGGAACTTGCCCTAGGTGCTCTATTTTAGCTGTCATACTAGTTCATTTTTGAGTTTAGTTAAAAAAAAAAATCTCTAACTTTTTATTTGAACTGTTTTTTGTTTTGTAATTCTTAG
Seq C2 exon
GGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-UBE2Q2:NM_001145335:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)