RnoINT0159284 @ rn6
Intron Retention
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189112865-189113206:+
Coord C1 exon
chr2:189112865-189112925
Coord A exon
chr2:189112926-189113115
Coord C2 exon
chr2:189113116-189113206
Length
190 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCAGATTCATTGCTTTGTAGAGT
3' ss Score
4.02
Exon sequences
Seq C1 exon
GAAACTATGCAGTCGAACTCGTGAATGACAGTCTGTATGACTGGAATGTCAAACTCCTCAA
Seq A exon
GTGAGTGGCAGCTCTGGGATGAGGGTTGAGGGAACCACATGTGTGGAGTGACCAGTGGAGCCCTAGAGACAGTCCTCTCCTTTTCAGTGTGTTGGTTGTGGGGTCCCAGGAGCAGGTATGGGCAATGGAACCCTTAGGAGGCTGCTTGGTCAGCACCCAGCAGGCTGAACCCAGATTCATTGCTTTGTAG
Seq C2 exon
AGTTGACCAGGACAGCGCTTTGCACAATGATCTTCAGATCCTAAAGGAGAAGGAAGGAGCAGACTTCATCCTACTCAACTTCTCCTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791:ENSRNOT00000028210:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017921=UQ_con=PU(11.9=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTATGCAGTCGAACTCGTGA
R:
AGGAGAAGTTGAGTAGGATGAAGTCT
Band lengths:
146-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]