HsaINT0176809 @ hg19
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170783202-170783481:+
Coord C1 exon
chr2:170783202-170783254
Coord A exon
chr2:170783255-170783347
Coord C2 exon
chr2:170783348-170783481
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCAAATATTTCTTCTTGTAGATT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTTTGTGCTTCTAGACTTGACCCAGATTATTTTATTTCATCCGTCTTTGAAAG
Seq A exon
GTAGGCATAATTTTATTAAGACAGGTATTAGGAAGTGTCCAGTTAATTTTGTTTTAATTTATAAAAATATGTTTCAAATATTTCTTCTTGTAG
Seq C2 exon
ATTTAAGGTAGTGGATTTGTTGACAATGGCATCACAACATCAAAATACAGTACTTGATGCAGAGCATGAGAGGTCGATGTTAGAAGGCGCTCTTACATTTCTTGTGATTCTTTTGAGTCTTCGTTTACATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-UBR3:NM_172070:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTTCTAGACTTGACCCAGA
R:
ACGAAGACTCAAAAGAATCACAAGA
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)