HsaINT0176809 @ hg38
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169926692-169926971:+
Coord C1 exon
chr2:169926692-169926744
Coord A exon
chr2:169926745-169926837
Coord C2 exon
chr2:169926838-169926971
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCAAATATTTCTTCTTGTAGATT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTTTGTGCTTCTAGACTTGACCCAGATTATTTTATTTCATCCGTCTTTGAAAG
Seq A exon
GTAGGCATAATTTTATTAAGACAGGTATTAGGAAGTGTCCAGTTAATTTTGTTTTAATTTATAAAAATATGTTTCAAATATTTCTTCTTGTAG
Seq C2 exon
ATTTAAGGTAGTGGATTTGTTGACAATGGCATCACAACATCAAAATACAGTACTTGATGCAGAGCATGAGAGGTCGATGTTAGAAGGCGCTCTTACATTTCTTGTGATTCTTTTGAGTCTTCGTTTACATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357:ENST00000272793:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTTCTAGACTTGACCCAGA
R:
ACGAAGACTCAAAAGAATCACAAGA
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains