HsaINT0178926 @ hg38
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77697863-77701471:-
Coord C1 exon
chr1:77701369-77701471
Coord A exon
chr1:77697932-77701368
Coord C2 exon
chr1:77697863-77697931
Length
3437 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTGATATTTTTTCCTTTAGATC
3' ss Score
10.05
Exon sequences
Seq C1 exon
CTTAACAGAGCGTTCCAAAAAGAGGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAG
Seq A exon
GTAAGTGGTTGACTGAAAAATTTTTTTTTGGTAAATTATTTGTTTTTTTGTTTGACAAGTATTTCTTGAATATCTGTGTGCACTTGGGATTACACTATTGAACAGAAGAGAAAAAGATCCTGTCCTCAGGGATCTTACGTTCTAGTTTATATTCTGTTGGTTGTAAATTTTGTTAAACTTATTTTATGAATTATAGCAGGAATAAGAGGACTGAACAAAGTAAATCTGTGATCTTAATGTTGAAAAAATTTTAGAAATCTTTATAAGGAATAAGAGGTTGCTTAAAGTATGGTTTATTCAATACAGTGGACTTTTAAAGTAAAATTGTATGACAATATTTAATAATATGAAAATAAGATATTCTGATATGTGCCAGGCACGGTGGCTCACGCCCATAATCCCAAAAGTTTGGGAGGCTGACGTGGGTGGATCACCTGACGTCAGGAGTTCAAGACCAGCCTGAAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCAGTCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAATCCACGAGGCGGAGGCTGCAGTGAACTGAGATCATGCCACTGTACTCCAGCCTGGGTGACAGAGCAAGACTTTGTCTTTAAAAAAAAAAAAAAAAAAAAGATTCTGATATGTGAAAAAGGCTGCAACAATATGCCTAGTTAAAGCTTTTTGTATTTATGTATTTACTTTTTAAAATTTTAAATTAATAGAGACAAGGTCTTAACCCTGTTGCCCAGGTTTAAGTACAGCAGCATGATTATGGCTCACTGCAGCCCTGAACTCTCAGCCCATGCGATCCTCCTACCTCCATCTCCTGAGTAGTTGGGACTACAGGCATGTACTACCACACTTGGCTAATTTAAAAATTATTTTTTACAATTATTTGTAGAGACATGGTCTCACAGTGTTGCCCAGGAACTCCTGGGCTCAAGCAGTGCACCAACCTTGGCCTCCCAAAGTGCTGAATTACTGAGTTCTCTCTGTATTGTCCAGGCTGGCCTCAAACTCCTGGGCTCCAGCGATCCTCTTGCTTCAGCCTCCTGAGTAGCTGGGACTATAGGTGCACACCACCATATCTGGCTTTTCTACACCTTTAAAAAAATTTATTTTTATTTTGTAAGTTCCAGCATACATGTGCAGGATGTGCAGGTTTGTTACATAGGTAAACATGTGCCATGGCGATTTGCTCCACCTATCAACCCATTACCTAGGTATCAAGCCCAGCATGCATTAGCTGTTTTTCCTGTTGTTCTCCCACCCCTCATCCCTCAACCCCCACCAACAGGCCCTAGTGTGTGTTCTCCTCCCTGTGTCCTTGTGTTCTTGTTGTTCAGCCCCCACTTATAAGTGAGAACATGCAGTGTTTGGTTTTCTGTTCTTGCATTAGTTTGCTGAGGATAATGGCTTCCAGCTCCATCCATGTCCCTGCATAGGACATGATCTCTTTCCTTTTTATGGCTGCGTAGTATTCCATAGTGTATATTTACCACATTTTCTTTATCCAGTCTATCATAGATGGGCATTTGGGTTGATTCCTTATCTTTGCTATTGTGAATAGTGCTGCCATGAACATATGTGTGCATGTATCTTTATAATAGAATGAATTGTGTTCTTTTGGATATATACCCAGTAATGGGATTGCTGGGTCAAATGGTATTTCTGGTTCTAGGTCTTTGAGGAATTGCCACACTGTCTTCCACAATGGTTGAACTAATTTACATTCCCACCAACAGTGTAAAAGTGTTCCCATTTCTCCACAGCCTCGCCAGCATCTCTTGTTTCTTGACTCTCTCTTTTTTTTGAAAAAGAGGCTCACTTTGTCACTCAGGCTGGAGTGGAGTGGCGTGATCTCAGCTCATTGCAACCTCCTCCTGGGTTCAGACGATTGTCCTGCCTCAGCGTCCTGAGTAGCTGGGATTACAGGTGCCGCTGTCATGCCTGGCTAATTTTTCTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGTTGGTCTCAAACTCCTGATCTCAAGTGAGCCACCTGCCTCGGCCTCCCAAAGTGGTGGGATTACAGGCATAAGCCACTGGGCCCAGCCTGTTTCTTGACTTTTTAATAACTGGCATTCTGACTGATGTGACATGGTATCTCATTGTGGTTTTGATTTGTGTTTCTCTAATGATCAGTGATGTTGATCTTTTTTTCATGTTTTTTTGGCCACATAAATGTCTTCTTTTGAGAAGTGTTCATGTTCTTTGTCCACTTTCTAATTGGGTTTTTTTAATTGTAAATTTGTTTAAGTTGCTTTTACAACTTTTGATGATGACCATGCGGTTCACTTTTGCCTTAAATTTTAAAAAGAATGTATTTAAACGGTTTCTTTTATAATGCTTTTATTGTTCTTAATGTTACTTTGATAATCTGAAGCAAATTAATTGTATAATTTCTTTCAAATTACAAAGGAATTGCTATTTTATAGCATTAGTGGTACATTTTGACTTGTAATCCCCAAATGGAGAGTTAAAAAATAATTTCTGGGCCGGGCGTGGTGGCTCATGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGGGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATGATGCCACTGCACTCCAGCCCTTGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAACAAAACATTTCTGTTAAACTGTGATGGTTGTGAACGAGCCTCTCTTACCTTCTTTCCTGGTTCTGTTTTGGGGGAACTAAGAACTAAAAACGAAGAAGCTCAGGAGAAGACATTAAGAATTAACCATAGGCCAGGTGTAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTAGATCGTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACTCCCATCTCTACTAAAAAAAAAAAAAAAAGCAAAAATTAGCCGGGCGTGGTGGTGTGTGCCTGTATTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAAGGCGGAGGTTGCAGTGAGCTGTGATGGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAGAATTAACTATAATAATTTGCCTGAGAAATAACCAGTCTGATAATGTAGTTATAGGTCACAATTTTGTCAAGCACAAAATTATGCAATTTTTTGTTACATTTCTTTGAAAAATACATTTTGATATTTTTTCCTTTAG
Seq C2 exon
ATCCTCCAGGTCCTATTGACAATACTAAGATTGCAGTCACTAAATGTGGTAATGTGATGCTTAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254:ENST00000370794:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(30.7=65.7)
A:
NA
C2:
PF139001=GVQW=PD(10.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains