BtaINT0158596 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67212474-67213768:+
Coord C1 exon
chr3:67212474-67212576
Coord A exon
chr3:67212577-67213699
Coord C2 exon
chr3:67213700-67213768
Length
1123 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTTTTGCCTTTTAACTTAGATC
3' ss Score
7.57
Exon sequences
Seq C1 exon
CTCAACAGAGCATTCCAAGAGGAAGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAATGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAG
Seq A exon
GTAAGTGTTTAACAGAAAGACAAAATTCTTTGCAAATTTTTTACTTGACAAATGTTTTTTGAATATATGTATTTGGAATTAAACTACTGAACAAGAGATCAGGGATCATACAGTCTAGTTTATATTTTGGTTATTTTTAATTTTTTAAAAACTTTCACAAATTATAGCATATTCATGGAAAGTGTAAGGGAACTAAATAAAAATTAGTCTACAATCCTAACATTAAAAACATTTTTTTAATCCTTCCAACAATAAGATTGGTTAAACTATGGTGCATCTGTTACAATGGGATACTATATGAACTTTAAAAATTATTTGTATAGCAGTGTTTAATAATTAAAAAATAAGATGTTCTTGATATATGAAAAAGGCTATAATATAGTATGCATAGTTGGAACCTTTAAAAAGGCAAACATGTACAAAGGCAAAAAGACCAGAAAGATGCGAAAATAATTTGCCTGTCTTTCTGTAGTGGGATCACAGTATTTTTTTCTCTCTTGTGCCTTTTTTTCTTTTAAAAGTATTTTGATAATGAAGGTGCACTATACTTTTGTATTCAAGGGGAAAACAAAGTTTTTTCCCGTTAAAAAAGGATTTGTTTTGAGAATTCCCTGACAGCCAGTGGTTAGGATACTGTGTTTTCACTACCAAGGATCCAGGTCCAATCCCTGGTCAGGGAACTAAGATCCTGCACACCTTCAGGCACAGCCAAAAAAAATATATATATATGCATTTTAGCATTTCATTGTATAATATTTTTAATTTAATGACAGTCTGAAACTGAGAGTTGCATTCTTTTTAAATTACAAAGGAATTGTTCTTTTGTAGCATTAAAAGTGCATTTTAATCTGTAATCCCCAAATGGATAGTTAAGAAATTATTTTTATTACATTTTGGATGGTAGTGAGAAAACTTCACTTGTCTGCTTTCCTGGTTCTGTTTTGGAGAACTAAGACCCAAAAAGAAAGAAGCTTGGAATAAGACAGTTAAGAACTGACTAGAATAATCTGACTGAAAAATAATCTGATTAAACAGTTACATCCTTCATCAATTCATGTTCAGAAATATGTAGTTGTTTGGTGCATTTATATATTTTGATTATTTGTTTTGCCTTTTAACTTAG
Seq C2 exon
ATCCTCCAGGTCCTATTGATAACACTAAAATTGCAGTCACCAAATGTGGCAATGTGATACTCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761:ENSBTAT00000027667:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(30.7=65.7)
A:
NA
C2:
PF063377=DUSP=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]