MmuINT0171664 @ mm9
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152052705-152054682:+
Coord C1 exon
chr3:152052705-152052807
Coord A exon
chr3:152052808-152054613
Coord C2 exon
chr3:152054614-152054682
Length
1806 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTTTATCCTTTTGACTTAGATC
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTCAACAGAGCATTTCAAGAGGAGGACTCCCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAG
Seq A exon
GTAAGTGGCTAACTGAAAGCTTATTAGCCAGTTCTTTTGTTTATTAATTTTATGAATATTGGATATACACCAGTGAACAATAAAAGACCCATGCTGTCAGGCAACCCACATTCTAGTTTATGGCCTTATCGCTATAAACTGTATCAATCATGCCAAGAATAAAAACCTGAACAGATTTTGTTTTTGGGAGATGGGATGGCTTAGCAGTTGCAAGCACTTGGTGCTCTTAGGGATCTGACTCCAGTTCTCAGCCCCCACAGCAGGCAAGAGCATTACCACCCGGGACCCCAGCGCCAGAGGATCAGACACTCCAGTCTCCACTGGCACTGACTGGCACACTTGCCCACACACAGTCTTAATGTTCAAGAACTTTACAGGCAGGTGGATCTCTTTGAGTCCAAGGCCAGCCTGGTCTATAACAGAGATACTGTCTCAAGACAAAGAGAAAACAACACCACCACCCCCTCCCAGAATGGAATGGAAAATTACACTTTATCCAATACAATGTGGACTTTAAAAAAAATATTTAAGCCGGGCGGTGGTGGTGCACGCCTTTAATCCCAGCTCTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAATAAAAATAAAAAAATATTTATATATGATAATAACTTGAATGAAAGGCATGATGATACATGACTTTAATCCTGGTACTGGGGAGGCAGAGGCAGGCAGATTTCTGTGAGTTCAAGGTCAGCCTCTTCTGCATAGCCATTTTCAGGCCGGCCAGGACTAGTTAGTGAGAATCTACTTTAATACTACTATTGCTATTAATAATAATAATGGTTAAAAATAATATATTCTTGATATGGTGTTATTTGCAAAAAAAAAAAAGTATATTGTTTGAATCCCTTTGGTGGGTTTGTTTTGTTTCAAGTCCGCATACAAAGTGATGGATTTATTTCAGATGCAGATGGTATTATACTTTGTTTTACTTCCCCCACTGCCCTCAACTATGTTATTTAAGCAGTGTATCATGCAGAACAAAACATCACAGATATTAAAACCATATGCCTATTTTTCTGTAAGATTAGTCATTTCTCTTCCTCATGCCTGTTGGGAGCTTTTGAGAATGGACTAAGTACTGTACTTTCATGTGCAAAGAAAAATGGCTTTTCTCCTAAAAGAAAGGTCTATCTTAATATTTCATTCTATAATGTTTTGGTTAAAAACGAAATTTGGAATGGTTTGAGAGGGTTTTTTTTTGTTTGTTTGTTTTTGTTTTTAAGCTTATTAAAGAGTTGTTGTTCATTAAAGGGCTGTAGCATTAACAAAATATTTTGATCTACAATTCCCAAACAAGTGGTTTTTCTAGAAGACTGGAGAGTTGGCTCACTGGTTAAGAGTACTGGCTGCTCTTCCAAAGGACTTGGGTTCAATTCCCAGCACCCACATGGTCGCTCACAACTGTAACACCAGTTCCAGAGGATCTGATACCATCACATATACAGACAATAGCACCAGTGTACATAAAATAAAAAAAATTAATCATTAAAGATAAATTGTTTCTATTATACTTTGGTGCTGAGCAACATCTCACCTTTCTTGGTTGTTTGGGGTCAAATGAAATCTCCAAAGCTGAAAAGATACTAAGAATCGATGACATTTGGTTAGTTCTCCGTAATTTCAGGTATAAAGCCATGTAGTTCTTTGCTGCATTTGGAAGTGGACATGTTATAATCTTTTTATCCTTTTGACTTAG
Seq C2 exon
ATCCCCCAGGTCCAATCGACAACACTAAAATTGCGGTTACTAAATGTGGCAGTGTGATGCTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-Usp33:NM_133247:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(30.7=65.7)
A:
NA
C2:
PF063377=DUSP=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: