GgaINT0036574 @ galGal4
Intron Retention
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17912220-17913164:+
Coord C1 exon
chr8:17912220-17912322
Coord A exon
chr8:17912323-17913095
Coord C2 exon
chr8:17913096-17913164
Length
773 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
CATTCTTTCCATCACAATAGATC
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTTTATAGGGCATTCCAAGAAGAAGAATCTCCATCAACTTTTTACTGCATCAGTATGCAGTGGTTCAGAGAATGGGAAGAATTTGTAAAAGGCAAAGACAGTG
Seq A exon
GTAAGCTGTGCTTCATTTCAAAATACCTGCTCTTTTCCTATTTCTTGATACACAGTGGTAATATTTTTGCAGGTTGTTTCTACTTTGGTAGAGAGATGGAGGAATAACAGCAAGAGAAGGCAACAAAAGTTCTTAGAACAAGCATCTAAGACATTGGTTTCATGGGTTGTAAATATACCCAGGAAGCAAACTACAAAGTACAATCAAATGTTGGTTATTAACAGGAATGGATAATGGGATAGCTGTGGAAAGAACACATTTGTGCTGGTGTGGAGGGTGGTGGTTGTTGGTAACAACGGGGATGCAGTTATGAGGGAGGATATATGTTGCAGTACAAACTGATAGATAATGCTGCAGCTTCTGCAGGAAAGGTGATCTTACTGGCACAGCAAAAACCTGTAGATAACGTAGTAACAACCATAACAATACAACTTGAGTATTCTTCAGGTGTCTCTAAAGATTTGAAATGGAAGTGTTGATAAAATGTTCTACAGTCTTACTGAGTTTGTTTTAGAACGATTTTGCTAGGGGTAAAAATGAGGATTAATTTGTGTTTGATGTTGCTTGAAGACTTACTGTAATCATGAATGTTTTGGAAAACTTCCTCTTATTTAAAATTCTGGTTATCTGTTAACAACTTAAAACATACTGTGAGGCAGTACAAAAAGCAAGCAGTAGACAAACTAGTTATTTCTCCTTCCTTTTGAAAATGAAAACTTCAGTCTGCTTTTTGTTTTTTGCACTCTTCCTAACCATTCTTTCCATCACAATAG
Seq C2 exon
ATCCCCCTGGTCCTATTGATAATGGTAAGATTGCAATAACAAAATGTGGAAATGCTGTGCTAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(31.6=68.6)
A:
NA
C2:
PF063377=DUSP=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]