RnoINT0161657 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257599366-257601207:+
Coord C1 exon
chr2:257599366-257599468
Coord A exon
chr2:257599469-257601138
Coord C2 exon
chr2:257601139-257601207
Length
1670 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTTTATCCTTTTGACTTAGATC
3' ss Score
7.94
Exon sequences
Seq C1 exon
CTCAACAGAGCATTTCAAGAGGAAGACTCTCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAG
Seq A exon
GTAAGTGGCTAACTGAAAGCTTATTAGCCAGTTCTTTCATTAATTTTATGAAACTTGGAGATTACACCATTGAACATTAAAAGACCCATGCTGTCCGGGAACCTATATTCTAGTTTATAGCTTTATTGCTAGAAACTGTATCATTATTAATCACGGTAAGAATAAAAGGACAAATTTTAACTTTAACTTTAAATGTAGGTTATAGAGAGATGGAATGGCTTAGCAGTTAAGAGCACTTGTTGCTCTTCTTAGGGACCTAAGTCCCTAAGTCAGTAGCCACACCAGGCAATTGTAACCCCAGCTCCAGGAGGATCAGATACTCTCTCCAGTCTCCACTGGCACTGGCACATTTATCCCATGCACACAGATACATAATAAAAATTAATTAAATCTTAATGCTGAAAAACTTTGGAGGCAGGTGGAACAAAGGCCAGCCTGGTCTATAACATAATAGAGATATTGTCTCAAGAGAAAACAACAACCCCCACTCCCCCCACAAAAAAAACAAAACAAAACCCAGAATGGAAGGTAAAATTATGCTTTATCCAATACAGTGGAATACAATGTGGACTTTTAAAAATAATTGTGCATGATAATAACTTGAATTAAAGGCATGATGGTACATGCCTTTAATCCTGGTATTAGGGAGGCAGAGACAGGTAGATCTCTGTGAGGTCAAGGTCAGCCTCTTCTACAGACCCACTTTTAGGCCAGCCAGGACTAGTTAGAATCTATTTTAATACTACTATTGCTATTAATAATAATGATAAAAAATAAGGTGTTCTTGATATGGTGTTATTTGCAAAAAAGTATATTGTTTAAATTAAATCCCTTGGGTTTGTTTTTACTTTTTAAGTCAGCATACAAAGTGATTTTCAAATATATATGGTATACTTTATTCTTATTCTTCCCCTACTGACCTCAACTATTCCATTTCAACAATGTATTATGCAAAACAAACCACAGATATTAAAACCATATGCCTATTCTTCTGTAAGATTAGTAATTTTTCTTCTTCATGCCTGTTGGGAGCTTTTGAGAATGGATTAAGTACTATACTTTCATGTGAAAATAAATGGCTTAGTATTTCATTTTATAATGATTTTGGATAAAAAACAAATTTGGAACTGATAGATAATTCTATGATTTTTTTAACTTATTAAAGGGTTATTGTTCATTAAAGGGATGTAGCATTAAACATTTTTTTTTTTTTTTTGTTTTGGAATTCCCAAATGAGCTGTTTTCTAGGGGAGTGGAGAGTTGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAAAGGACCTGGGTTCAATTCCCAGTACCCACATGGCAGTTCACAGCTGTCTGAAACTCATGTTTCAGAGAATCTGAAACATCACATTCACATACAAGCCATCAGAACACCAATGTACATAAAATAAAAATGAATGTCATTAAAAAATAGTTTGTTATACTTTAGTGCTGAGTAACACCTCACCTTTCTTGGTTGTTTTGGATCAAATGAAATCTCCAAAGTTGAGAACATACTAAGAACCGATGATATTTTGTTAAAAAATGACTAACTTTATTATGTTTATAGTTCTCAATTATTCAGGTATAAAATTAAGTAGTTCTTTGCTGCATTTCTTTGGAATTGGACATCTTATAATTTCTTTATCCTTTTGACTTAG
Seq C2 exon
ATCCTCCAGGTCCAATAGACAACACTAAAATTGCAGTCACTAAGTGTGGTAATGTGATGCTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(30.7=65.7)
A:
NA
C2:
PF063377=DUSP=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]