HsaINT0180819 @ hg38
Intron Retention
Gene
ENSG00000167987 | VPS37C
Description
VPS37C, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr11:61134036-61138835:-
Coord C1 exon
chr11:61138737-61138835
Coord A exon
chr11:61134208-61138736
Coord C2 exon
chr11:61134036-61134207
Length
4529 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
CTGTTGTCCTGCCCTTTTAGGTC
3' ss Score
12.74
Exon sequences
Seq C1 exon
GGAAGGATGGAGACGCTGAAGGATAAGACCCTGCAGGAGCTGGAGGAGTTGCAGAATGACTCGGAGGCGATTGACCAGCTGGCCCTGGAGTCCCCTGAG
Seq A exon
GTAGAGGGAGGCTGGTATGGGACCCAACAGAGGCCAGCAGATGAGGCTTGTTAAGAGGCGCTTTTTAAGGATGCTGGCTTATTGGAAGTTTTGGCCAAATTCATCTCCCTTTTCTGTGAACTTCATCCTGGTTTGGACTCAGAGGAATCCCTGAGGCTTCAGACCAGTTCCTGGGAGTTCTTGGGAGTGCTGGGGAGTCCACTGCCTCCTGGTGCCTTCCCAGGACCCAGATACCCCAGGAGTCCCCACACTGTCGTTCCAGCCCAAATCTGGAGGCAGCTCCTCAAAGCACTGGTATGGTTTTGTACCCACTTTTCCCCAAGAGCCTTGTGCGATCCCATATCTCCAGGTGACTCTAAGGCTTCTAGGAGCCATTCTTGGGCTGAGATCTAGCTCGTCTCCCATTTGATCCTGTTTCTCCTCATAACTGGCCCCTAATCCTCTAGTTCTTAATCACAGACTCCTTGAGGAAAGAAACAGAATCCTGCCTGTGCAGAGATTTACACTTAATAAAGGACATTCCCTGCCCCTAGCATCTCCTGTGACCCTGGGATGTCCCCTGTGAGATGGGAGAGGTCAGGCCACACAGCCAGAAATATCCACGGTCACCCATTGAGTGGCTGCAGCTCATCCGTTGTGCTGGAAGCTCCCGCTTCCTATACCTAATGTGAGGGAGAGACACACACGCAAGCAATGCCAGCTCCTTTGATTTGCATTTGGAGTACATGTTTACTTGCACGGATGAGCAGGTATGGTGTGTCTCTTCTGTGAACTTGTATTTTGAAAAAAATAATGACGTTCCCCCATCCAGTGTCTCCGTGCTTCCATGCCATGGGGGGCGCCAGGCCGGTGAGTCCCCTGCTCCTGTTTCTGCTTGTGCTCTTGCTGCCTGCTGCCTGCTCTACTGCCTAAGTGAGGAATCTTAACTGGGGTTGGAGGTGACTGAACATTGGGTTGAAAAGATCTCCTGGTGGGGAGATTGTGAGGAGAGGTGGACACCATGGGCCACATCCTACCACCCTAGGGCTTTTTTAGTCCTCAGCAAGGACGTGGAGCAAAGCTTGCTTGTCGAAGCCCCAGGGCTGACTCAAATGGCTTGTGAGGCTGTGAGCTCTGCCAGGGCGTTGCTCCTGCCCAGCCTGGTGCTGGGCACAGTGCAGCTCTGCCTGCGTTCCTTTGTCACATATTAAGCACTGTGAGCATGGTGCCATGGGAAGCCCAAGGCCTGCTTCTAGAGTGTGCAGAGCTGAGCAGGCTGACAGAATCGTGACAAAGCAGAGAATCATGGAAAATGTGAGCAGAAGCGACCTCTTGGGCAGAAGGCACTTGAATTTTGTGGTGTGCAGCCACACCTGTCCCATCGATCTGAACTCTCTGAGGGGAAAAAACACTCGTGGATCAGGTAGAAATGAAGCAGGACAAGCCACTTAGACTTCAGACCATTGGCAAACTTTTTTATCGTGGGCTATAAGACAGTCATTGAGTCACAGTGGGATTGTGAGAAGAGACAGGAGCTCTCTATTAGTTCGGGACATGGACACGGCTAGGAGAGAAGGGAGTTGGCAGGGGCTCTCTCCGTGTAGAAGAGTGTGCATAGAGGGGTGTGTGGAGGGGAGCTGCTTTGGGTTGGGGGCCAGATATAGAAGGGAAACACCGTAACTTATTAAGGAAAGTTAGTCAAAATGGTTTTATCTCCCACTTTGCAACTTTTTTTAATTTTTGTTTTTTTAGGCAGGGTCTTACTTTGTCACCCAGGCTGGAGTGCAATGGCGCCATCATGGCTCACTGCAGCCTCCACCTCCTGAACTCAAACAATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCACACCACCACACCTGGCTAATTTCTAAATTTTACATAGCAACTTTTAAGAACTATTAGATACTTCTTGTTGAGTTTTGCTGTAGATTCAAAGAAAATTGATAATTATCTATAAAGGTTAGTAGCGACTCCTTCCTTTTCTAGCTATATATCTGTATGAGTATAGATTCTTCCTCCTTATTTCCACCAAAGTAATATACTAGGGCAGATTGAATTCAGAAGCAGCAAAACATGTGAAAACATCTTTTATTTACCTATTTTTAGTCTTACCTCTTTTCAGTGACTGGGAGGACTTCACACTGAACCCCTAATATGCATCGATATGCAATTTTCTAAATTGATGCATATTTTGCATATTTATGGGGAAGATGAGAATCTTTGTTGCATGCATAGAATGTGTGATGATCAGGCTGGGCGCGGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGAAGACCTGAGGTCAGGAGTTCGAGAGCAGCCTAGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACGTGCCTGTAGTCCCAGCTACAAGGGAGCAAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGAAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGCAACAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAATGTGTAATTAAGGTCAGGGCATTTAGGGTCTCCATCACCTTGAGTATTTGTTGTTTCTGTGTGTTGGGAACATTTTACGCTTCTTGCTACTTTGAAATATACAATACATTGTTGCTGACCATAGTCACCCTACTCAGCTGTTGAACATTAGAACTTACTTCTTCTATCTACCTATATGTTTCTACCCATTGACCCACTTCGTGGAGAAAGATGTAAGAAGGCTGTGGAGACAGGGAGCAGAAATAAGTAGGGCAAGATTTAGGGGAAAATGATACAGCGTCGATTTGTTGGTTTAGACGCAGGGAAAAGGCAGTGGACCTATAGGGAGGCCAGAGGATCCATGGGGCCCTGCAAGGGATGGGTGAGCAGGAGGGCTTTAGGCCTTTCACTCTGGGTCAGCCATGTAAGTAAAGTTTCCATGGCTAATAAAAATTAGATTGAGAGTCACGTATGGTGGTTTGTGCCTGTAGTCCCAGCTATTGGAAGGATGGGATGGGAGGATTGTTTGAGGCCAGCCTGGGCAACGTAGGGAAACCCCATCTCTACAGAAAATAAAAGAACTTAGCCAGGCGTGGTGGTGCATGCCTGTAGTCCCAGCTGCTGGAAAGGCTGAGAAGGGAATATTGCTCGAGCTCAGGAGTTTGAGGCTGCAGTGACCTATGGTCATGCTATTGCACTCATTCTGGACGACAGAATGAGACCATGTCTGTAGAAGGCAGCAGCGTGGGCTCTAGGCTGGACAGACCCTGGGCCCTACATCCCTGAACCCTGGCAGCCTTGTCTGGAGGGCTCAGGGAGGGCAGGAAGCTGTGGTATCCCTCTTTCCAATCTGGAGCACAAAGAAGAGGCAATGGGCCTGCCCCAGAGTGCAGGACCTCGGCCCCTGTAGCTGGGACAGCAGAAGGGGTAGCCTTTCCCCGAGGCCGCCTCTTCCAGAATGCCCACGGGCTTCCTATGTCTCGTGGGGCATGAGCCAGTCTGGCTTGGTCTGTCACATGCTGACCATGGTGGAGAAGCTGCACAGAGAAGCTGCACAGTGAGGGCCTGACTTAGAGTCAGTCTTGCTGAGCTGTTCCCTGCGCCCTGTGGCGGGTGCCGAGGCCTCTCTTCTGGTGCCCCATGCTGCTGACAGTGTACTGTCACTGCTGGCTCAGCATGCAGGTCTGACTCCTCAGCCCTCCTCTTAGGAAGAGGACTCCTTGGCGGATGCATGGGGCGTCACATCACAACAGCTGGCAAGGGTGCCTTGGCTTCTGTCTCACTGGCTGGCAGCGACGAAGAGCCTGGCAGAGGGGTAAAGTGCCGCTTGGCTTGGGGAAGTGTTTGCAGCAGGGAATGTCCAGGGTGGCCCCTCTGGCTCATCTGTGCAGCTTCTCTGCAGGACACATGTGTGGCATAGGAGGCAGGTCCAGGTCTCTCCTAAGTCAGTGGCATGGTCTGGTCCAGGGACCTGGCTCTCTCACCCCTCACAATAACTTTATTTGGGGCCTCATTATATGTCTTGCCTGTGCATCTGGCCAGGACCACCTGAGCCCACCATGGTAGGTCTCTTGACTCTGAAGCTTGGGGATAAGTAATTGGGACTTTTGATCCCCTCCCTCCTGGAAAGCCTCTGCTTTTTCTCATGTAAATTGGTCCACCCCCTCCTTGGGGCTCTGCACATTCCATCATGGATATCAATCACATGGCCTTGGGCGAGCTCTTCACCTTCAGCGCCAGGTTCCCATGCGTCTCCACCTCGTGGGCTGTGGGTTAAGGATTAAGTGAGGCGCAGAGTACTTCATTCAGGGTTTGAACCTGGCTTTGTCTGACTAGTTGAGGGCTGAGTATTGCCCCAAGGATGAGCCTCTCCGCCCCAAGGTGAGCAATGTGTCCCCGAAGCCCCTGACCCAGGCTGCCAGGAGGTTAAGGGTGATGGACGTTTTCCTTAGGTTCTGTTGTCCTGCCCTTTTAG
Seq C2 exon
GTCCAGGACCTACAGCTGGAACGGGAGATGGCACTGGCCACCAACCGGAGCCTGGCAGAGCGGAACTTGGAGTTCCAGGGTCCCCTGGAGATCAGCCGCTCAAACCTCTCGGATAGATACCAGGAGCTCCGGAAGCTCGTGGAGCGGTGCCAGGAGCAGAAGGCAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167987:ENST00000301765:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.112
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=87.1)
A:
NA
C2:
PF072008=Mod_r=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains