HsaEX0070593 @ hg38
Exon Skipping
Gene
ENSG00000167987 | VPS37C
Description
VPS37C, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr11:61134036-61161617:-
Coord C1 exon
chr11:61161391-61161617
Coord A exon
chr11:61138737-61138835
Coord C2 exon
chr11:61134036-61134207
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGTGTCACTGTGTTCACAGGGA
3' ss Score
7.54
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
GTGGCCCGGGCGGCCGCGAGCGTGTGTGTGTGGCACGATGTCGTGGTAACTCAGAGGCGCGCGAGGCGGGGCGGCCAACGGGGTCGCGGGGCGAGCACGCGCGCCACTGGGGCGCCGGACGTTGCAAGGGGGTCACATCCGGTAGGGGGCGGGCCTGGCGGACCCCGGAAGTGTGGGCGCGGCTGCGGTTTAACCCGCGGTGGCGGCGGCGACGGCGGCCCTGGCAG
Seq A exon
GGAAGGATGGAGACGCTGAAGGATAAGACCCTGCAGGAGCTGGAGGAGTTGCAGAATGACTCGGAGGCGATTGACCAGCTGGCCCTGGAGTCCCCTGAG
Seq C2 exon
GTCCAGGACCTACAGCTGGAACGGGAGATGGCACTGGCCACCAACCGGAGCCTGGCAGAGCGGAACTTGGAGTTCCAGGGTCCCCTGGAGATCAGCCGCTCAAACCTCTCGGATAGATACCAGGAGCTCCGGAAGCTCGTGGAGCGGTGCCAGGAGCAGAAGGCAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167987-'0-16,'0-11,13-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.710 C2=0.112
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.0=87.1)
C2:
PF072008=Mod_r=FE(38.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGGTCACATCCGGTAG
R:
AACTCCAAGTTCCGCTCTGC
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development