GgaEX6036462 @ galGal3
Exon Skipping
Gene
ENSGALG00000005197 | VPS37C
Description
NA
Coordinates
chr5:357534-358542:+
Coord C1 exon
chr5:357534-357702
Coord A exon
chr5:358187-358300
Coord C2 exon
chr5:358371-358542
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATTGCTTTCCCCCTTCTAGGAG
3' ss Score
10.9
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TTACGCCCGCCGCTGTTTGCGGCCTTTCGGTGCCGTCGCGGGCGTCGCGTTGGCGGAGGGGCTCCGCTCTGAGCCCCGAGCGGGGACGGAGCTGGGGAGAAGCGGGCCGAAGGGAGGCGAGCCTTGACAGGAGCGCCTGGTGCGAGCGAGCGGGCCTTCCGGGTGCGCT
Seq A exon
GAGCCCACGGCTGCCGTGAGCATGGACACCCTGAAGGACCGTACTGTGGAGGAGCTGCAGGCACTGCAGGAGGATGCTGCGGAGATCGAGCGCTTGGCCCTGGAGTCCAGGGAG
Seq C2 exon
GTGCAGGAGCTGCAGCTGGAGAGGGAGATGGCACTCGCTGCCAACCGCAGCCTTGCTGAGCAGAACCTGAAGTTCCAGGTCCCGCTGGAGACCGGACGTTCTGAGCTCTCCAGCAAGTATGAGGAGCTGCAAAAGCTCGCCGAGCACTGTAAGGAGCAGAAGGCAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005197-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.474 C2=0.086
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.0=71.1)
C2:
PF072008=Mod_r=FE(38.0=100),PF133241=GCIP=PU(62.6=98.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGAGCTGGGGAGAAG
R:
CAGCTTTGCCTTCTGCTCCTT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]