MmuEX6031543 @ mm10
Exon Skipping
Gene
ENSMUSG00000048832 | Vps37c
Description
vacuolar protein sorting 37C [Source:MGI Symbol;Acc:MGI:2147661]
Coordinates
chr19:10688883-10710441:+
Coord C1 exon
chr19:10688883-10688983
Coord A exon
chr19:10706210-10706308
Coord C2 exon
chr19:10710270-10710441
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTATTGCTTTGTGTTTGCAGGAG
3' ss Score
8.42
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AGCTGGACGCGGGAGTAAGTCACATCCGGTAGAGGCGGGGCTCGTGGATCCCGGAAGTGCGGGCAGCGGCTGATTGCCCGCGGTAGCGGCGGCCCCGGTAG
Seq A exon
GAGAAGATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCCGGCTAGCCTTGGAGTCTCCTGAG
Seq C2 exon
GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048832-'3-6,'3-4,19-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.774 C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.0=87.1)
C2:
PF072008=Mod_r=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGGAGTAAGTCACATC
R:
AACTCCAGGTTCTGCTCTGCC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types