BtaEX6102543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008064 | VPS37C
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr29:38037233-38063344:-
Coord C1 exon
chr29:38063324-38063344
Coord A exon
chr29:38040736-38040833
Coord C2 exon
chr29:38037233-38037404
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTCTGTGATCCCAGGAA
3' ss Score
6.56
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CAGCTGCGGAGGCGGCTTGGG
Seq A exon
GAAAGATGGAAACGCTGAAAGACAAGACCCTGGAGGAGCTGGAGGAGATGCAGAACGACCCGGAGGCCATCGACCGACTGGCCCAGGACTCCCCGGAG
Seq C2 exon
GTCCAGGATCTGCAGCTGGAGCGGGAGATGGCGCTGGCCACCAACCGCAGCCTGGCCGAACGGAACCTGGAGTTCCAGGGTCCACTGGAGATCAGCCGCTCAAACCTCTCAGACAAGTACCAGGAGCTCCGGAAGCTGGTGGAGCGGTACCAGGAGCAGAAGGCGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008064-'0-2,'0-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.968 C2=0.155
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.0=87.1)
C2:
PF072008=Mod_r=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]