MmuEX6031543 @ mm9
Exon Skipping
Gene
ENSMUSG00000048832 | Vps37c
Description
vacuolar protein sorting 37C (yeast) [Source:MGI Symbol;Acc:MGI:2147661]
Coordinates
chr19:10763305-10784931:+
Coord C1 exon
chr19:10763305-10763469
Coord A exon
chr19:10780700-10780798
Coord C2 exon
chr19:10784760-10784931
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTATTGCTTTGTGTTTGCAGGAG
3' ss Score
8.42
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTGGCCACCCCTAGGCCTACAAGGCAGGACACTCGGGGCGCGGCGGAGGGGCAGTGCGGCTCGTTCTCAGCTGGACGCGGGAGTAAGTCACATCCGGTAGAGGCGGGGCTCGTGGATCCCGGAAGTGCGGGCAGCGGCTGATTGCCCGCGGTAGCGGCGGCCCCG
Seq A exon
GAGAAGATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCCGGCTAGCCTTGGAGTCTCCTGAG
Seq C2 exon
GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048832-'2-1,'2-0,8-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.774 C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.0=87.1)
C2:
PF072008=Mod_r=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACATCCGGTAGAGGCG
R:
TAGAGCGGCTGATTTCCAGGG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: