GgaEX6036462 @ galGal4
Exon Skipping
Gene
ENSGALG00000005197 | VPS37C
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr5:441436-442520:+
Coord C1 exon
chr5:441436-441867
Coord A exon
chr5:442165-442278
Coord C2 exon
chr5:442349-442520
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATTGCTTTCCCCCTTCTAGGAG
3' ss Score
10.9
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ACACAACACAGAGGAGCTCCCTGCACGGATCCCCTGCAGTGCGGCCGCCACAAGCCAGGCCCCGCTTCAGCTCCAGCCACAAACGCGGCCCAGCTCTCGAGGCCGCACTGAGCCACAAGATGGCGGCGGCGTCACGCACCCCTCGCCGCCAGGGGGCGCCGCATCCCTCAGCGCGCAGCGGCCGCGCTCGCTTCCGGTGTGGCGCCGGAAGTCGGTGGCGGCGCGGCCCGGCGGCCCGAAGCCGGGCGGAGCGAGGCCGGGCCTTACGCCCGCCGCTGTTTGCGGCCTTTCGGTGCCGTCGCGGGCGTCGCGTTGGCGGAGGGGCTCCGCTCTGAGCCCCGAGCGGGGACGGAGCTGGGGAGAAGCGGGCCGAAGGGAGGCGAGCCTTGACAGGAGCGCCTGGTGCGAGCGAGCGGGCCTTCCGGGTGCGCT
Seq A exon
GAGCCCACGGCTGCCGTGAGCATGGACACCCTGAAGGACCGTACTGTGGAGGAGCTGCAGGCACTGCAGGAGGATGCTGCGGAGATCGAGCGCTTGGCCCTGGAGTCCAGGGAG
Seq C2 exon
GTGCAGGAGCTGCAGCTGGAGAGGGAGATGGCACTCGCTGCCAACCGCAGCCTTGCTGAGCAGAACCTGAAGTTCCAGGTCCCGCTGGAGACCGGACGTTCTGAGCTCTCCAGCAAGTATGAGGAGCTGCAAAAGCTCGCCGAGCACTGTAAGGAGCAGAAGGCAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005197-'2-2,'2-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.290 C2=0.052
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.0=87.1),PF133241=GCIP=PU(20.0=74.2)
C2:
PF072008=Mod_r=FE(38.0=100),PF133241=GCIP=FE(49.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGAGCTGGGGAGAAG
R:
CAGCTTTGCCTTCTGCTCCTT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]