DreEX0084486 @ danRer10
Exon Skipping
Gene
ENSDARG00000031836 | vps37c
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061110-126]
Coordinates
chr1:44248606-44254065:+
Coord C1 exon
chr1:44248606-44248991
Coord A exon
chr1:44249359-44249467
Coord C2 exon
chr1:44253894-44254065
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACGTTACTGTTGTTTATTAGCTG
3' ss Score
5.75
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTGCTCGAATTGTCATCGATGCTGCTTTTACGGACACACTTAAGTATGCCTTTCTGAGTTATTATTTCGCCTGGCGACGTTTTATTTTGAATAGCAAACCGCCTTGTCCAACTGCTGTCTTTTAAGTAAGCTAGCCGTCCAGCTAACCGCGGAGAGATTCCTGTCTCCGGGAATCATTTCTCACATTTATTTCCACTTTCCGCCGGGTTAAATAACACCCGAGACCTGGTACAGATTATATCTCGTAGATGTTTCCAACAGGAAGAGGGTTTTAATGCTGAAGACGCTCGCGCTTCCGTCTACATCTTCACGTCACTCGCTTCCAGTCAAGTTTGATGTTTTTCCATGAGCACCGTGTGGAGAGGACTTTGATTTGCTTGTGCTTT
Seq A exon
CTGTCCTAGCAAATCAATGGAGAAGCTTCAAGACCTCAGCCAGTCCGAGTTGCAGGATTTGCTGGACAACTTGGAGCGGGTGGAGTCTATGGCACTGGAGTCTGATGAG
Seq C2 exon
ATCCAGAACATTCAGCTGGAGAGAGAGATGGCTCTGGCTGCAAACCGCAGTCTGGCTGAGCAGAACCTAGACATGAAGCCCCGTATTGAAAATGACAGAGCACGGCTGGTGGAGAAATACACTGAACTGGAGGCAGTGAGGGAGAAATACAAACAGCACTGTGTCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031836_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.086 C2=0.098
Domain overlap (PFAM):
C1:
NA
A:
PF062166=RTBV_P46=PU(33.3=93.5),PF072008=Mod_r=PU(32.9=87.1),PF120613=DUF3542=PU(31.0=83.9)
C2:
PF062166=RTBV_P46=PD(64.4=96.6),PF072008=Mod_r=PD(64.6=91.4),PF120613=DUF3542=PD(66.7=96.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGTTAAATAACACCCGA
R:
TGTCTAGGTTCTGCTCAGCCA
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]