HsaEX0070593 @ hg19
Exon Skipping
Gene
ENSG00000167987 | VPS37C
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:26097]
Coordinates
chr11:60901508-60928916:-
Coord C1 exon
chr11:60928863-60928916
Coord A exon
chr11:60906209-60906307
Coord C2 exon
chr11:60901508-60901679
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGTGTCACTGTGTTCACAGGGA
3' ss Score
7.54
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
TGGGCGCGGCTGCGGTTTAACCCGCGGTGGCGGCGGCGACGGCGGCCCTGGCAG
Seq A exon
GGAAGGATGGAGACGCTGAAGGATAAGACCCTGCAGGAGCTGGAGGAGTTGCAGAATGACTCGGAGGCGATTGACCAGCTGGCCCTGGAGTCCCCTGAG
Seq C2 exon
GTCCAGGACCTACAGCTGGAACGGGAGATGGCACTGGCCACCAACCGGAGCCTGGCAGAGCGGAACTTGGAGTTCCAGGGTCCCCTGGAGATCAGCCGCTCAAACCTCTCGGATAGATACCAGGAGCTCCGGAAGCTCGTGGAGCGGTGCCAGGAGCAGAAGGCAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167987_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.855 C2=0.121
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PU(18.6=87.1),PF056227=HOOK=PU(31.2=96.8)
C2:
PF072008=Mod_r=FE(39.3=100),PF056227=HOOK=FE(59.4=100),PF0001021=HLH=PU(83.3=43.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTAACCCGCGGTGG
R:
CTTCCGGAGCTCCTGGTATCT
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)