HsaINT0185239 @ hg19
Intron Retention
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113667641-113673257:+
Coord C1 exon
chr3:113667641-113667810
Coord A exon
chr3:113667811-113672546
Coord C2 exon
chr3:113672547-113673257
Length
4736 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TTTGTGCTTTTTCTGAATAGATG
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTGCAAATCATGACACAGAAGGGCAGTATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
Seq A exon
GTAAGAACAGAGCATTTCTTGACGCTGGCCCCATCACCCTTCTGAGAACTGCCATGTGTACTTTCAACCTAGCCACCCAGAATGCTAGAATTTGCTCTTGATTCTATTTCCAAGCATCTAAAATGAGAGTTGGCTTCTGTGTCAAGTGTGAGGATTTTAGAAAGATGGATTACGCAGTAGTGCACAGCTGTCTGTCTGCTCTGTTTTATAGGATATTATTTTTCGTTTAAAGAGAGATGAGGGAGAGAACAGGCAGTTTAAAGGGATAGTAGGCAAGTTAGTATAAAATAAAATGCAAGCCAGCAGAATCTGTAAGTTTAAAATGAACACAATAGTTCCAGAAAGTTCCTGCCTTCTCAGAGGTCTCAGCATTTAGAGACTGACTACTTGGGACTGGGTGGCACCTGACCACAGAGGGCCTTGTGGGTTGAAATTTCATTTTCCTGCTGTTAGTACTGGTCTTGCCCCTTGTTTCTGGGGAGGAACTCCAGCCAGAAGGCATGTATCTCCCCTGGATTCACAGTTTTCAGTGCGACCAGCAACACTCTTGATTGATCATACTGTATTTGGCTTTTATTTTCCAAGTGATGGAAATTACTATCCAAAAAGAGAATTTTTAACATCACTGAAAAAATTTGGTGTCGGACAGTGAATAATCTGGTTTTAATCCATTTTCTGAGTAATTATATATTTAAAAATCACTGTCAATGGAAGTCATAATGTGGGAAGGATAGGGATGTTGGAAACTTGCTTTTCCCATTAATAATTATTTCTGGTTAAAAAAGTCATTGCAACTGCCAATTTGTTGACTTAGAACTTGATACATTAATACAGCCATGAAAAGCATTCCCTGGGGTCTGCAGTCTAGTACCAGCCTTGACTATTAAAAACCCAGTGAACCCTTTGTCGTTCTTACTTGACAGTGTACTGTGTAGTCTTTTTTATGGATGTCTTTGAATATAGGTTCTTTAGATTTAGTCTGAAATCTATACTGAGAAAATAGAGCACTTTGCACTAATGAATGGAGAAATGATGCTGTTTCCATAACCACCATCACTCAAGACCGCAGCTCTTCCATTAACCTTGCTAACTCTTCCTCCCTCCTAGCCCTGGAGACCTTGGCTGTCCCCTGAGGCATCTCCTCTGCTCTCTCTGTACCCCTCTCCTCTGTGTTTCCACCGTGCCTGCTGCTCTGTATGATTCCCAATTAGTTATCTCTAAGTTCTAGTCTTACCTTTAAAAATTGTCTAAAATCAAAGTTACCTTTCCTTAAACTCTACCTTTTCTTACTAGCCTGTCTTAATTTGTTCAGGCTGCTATGATAAAATAAATACCTGAGACTGGGTAATTTGTAAACAATATACATCTATTGCTCACAGTTCTAGAGGCTCAGAAATCCAAGATCAAGGCACTGGCAGATTCAGTGTCTGGTGAGGGCCCTTTTCCTCATAGATGACACCTTCTTGGTGTGTCATGACATGGCAGAAGGGGTGAATAAGCTCATAGGGCTCTATTATAAGGGCACAAGTCTCATTCATGAGGGCTGTGCCTTCATGACCTAATCACCTCCTTAAGGTCTCACCTCTGAATACTATTGCATTGGGAATGAGGTTTCAACATAATGAACTTTGGAGGGACACAGATACTTCCTGGCTCCCTAAAATTTATGTCCTTCTCACATGCAAAATACACTGATTTCATCCTAATAGCCCCAAAAGTCTTAGCTCATCCCAGTGTCAATTCAGAAGTCTAAGTCCAGAGTCTGGTCTGAATATCATCATCCAAATCAGATATGGATGAGTTTCAAGATACGATTCATCCTGAGACAAGTTCTCCTCCACATGTGAGCCTGTGAAATCAAACAAGTTAGGTGCTTCCACAATACGATGGTAGGACATGCATAGAATAGACATTCCCATTCCAAAAGGGAACAACAGGAAGAAAGGAGTGTTACTGACAGGTCCTAACCCAGTGGGGCAAACAATGTTAAGCCTTAATAAGGCTTGAGAATAATCTTGGACTTGATGTCCTGCCTTCTGGACACACTGGGTTGGCGGTTGGGCCCCCAAGGCTCTGGGTGTCCCCGCCACCACAGCTTTGTTGCGCACAGCCCACACTGCAGCTCTCATGGGTTGGAGTTCCTACAGGTGCCTCCAGCTCTCCCAGGCTGGAGTTGTATGCTTGTGGCTCTACGGGGCTCTTGGGGGTGACCCTGTCCCCACAGCTCCAAGCAGGCATTGCCTCAGTGGGGTCTCTCTGTAGTGGCCCCACCACAATGACAGCTCCACTGGGCAGTGCCCTAGTGGGGGCTCTCTGTGGTGGCCCCACCCCTGTGGCAGTCCTCTGCCTCGGTCCCGAGGCTCTCCAGGGCATCCTTTGAAGTCTAGGTGGAGGCAGCCAGGCCTCTACAGCTCCTACACTCTGGATGCCTGCAGCATTGGCACCCTGTGGATGCCACCAAGATTTACCACCTATGCCCTTCAGAGGGGTGGCCTCTATGGCATACCTAGGCCCAGTGGAGCCACACCTGGAGCTGCCATGGAGGGTGCACCAGAATGTAGGGAGCAGAGACTTCAGATGGCACTCAGCAGTACACCCTGAAGCCCCATGGGTGCCCTGGGCCCTCTTATGAAACTGTCTGCCCTCAAAGCCCTGGCACTTCAGGTTTGTGGTGGGAGCAGCAGCCCCAAGGATCTCCGAATGCCTTCAGGGTCCTTCCATTGTCTTGATGACTGGCACGGGGCTAATCCATACTGATCTCATCTACATCCTTGCTGTTCTCTCCCAAACATGCTTTCTCATTTGTTACAATATAGACAGGCTGAGAATTTTCCAAATCTTTGTTTTACTCCCCTTTTGATTATGAGTTTTGTCTTTAAATTATTTCTCTTTGGCTGGGCGCGGTGACTCACACCTGTAATCCCAGCACTTTGGGAAGCCCAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGAACGACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAAGTAGGAGAATCGCTTGAACTCAGGAGGTGGAGGTTGCGGTGAGCTGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAATTTCTCTCCTGCATTTTACCCTAAGCATTTATGAGAAGCCATGCAGCACCCTGAACACTTTGCTTAGAGATTTCTACTGCCAAATATTCAGTTTAATCACTCTTGAGTTCTACTTTCTACCAAACAGTAGGACACAAACACAATTCCACTGAGTTCTTTTTATAAGTGTCCAGGATCACCTTTCTTCTAATTTCCAATAACATGTTTGTCACTTCCATCTGAGATCTTATGAGAATGGCTTTTACTGTCCATATTTCTGCGAGCCTTCTGTTCATTACCTCTTAGGGATTCTCGAAGATTGAGGCTTTCTCTGCAGCTCTCCTCTTCTGCCAGAATCACCCTTGACAGTTTGTTCAGATAGTCTAGGATTTTTCCCAGCATGCACTTCCACACTCTTCTAACCTCTACCCGTTACCCGGTTCCACAGCTGCATCCACATTTTTAGATATCTGTTGTAGCAACATCCTACTTCTTAGTACCAATTTCTGTCCTAGTCTGTTCAGGCTGCTGTAACAAAATAACTTAGGCTGGGTAATTTATAAACAACAGATATTTATTGCTCACAGTTCTGGAGGCTGTGAAGTCCAAGATCAAGGCAGCAGCAGATTCAGTGTCTGGTGAGGTCTCCTCAGCTTCATAGACAGCACCTTCTTGCTGTGTCCTCACATGGTGGAAGGAGCAAACAGGCTCCCTTGGATCTCTTTTTTAGAGGCATTAATTCCACTCATCAGGGCTCTGCTCTCATGACCTAATACCCTCCTAGAGGCCCCGTCTCTTAATACTCTTGCATTGGGGATTGGGTTTCAGCATATGAATTTTGGGGGCATAAACATTTAGAACATAGCATAGCCTAAGTGTGCAAAACAGTCAACCAATATCATTCCATTCACCAAGTTCAGTGATTTGACTCATACTAGTTTGATCTCCATTCTTCTCTATGTAGCCCTGTCCCTGTGGGACTAGTCTACTCCCTGGGCTCATGCCAGGTATGTGCTGCACACATTTCTTTCCACTGGAAGGCCTTCCTTACTCCCTCTCTATTCATACACATGCTAGCTGGACATCAAGGTTGAGCACAGATCCCACCTTTTCCACAAAGACCCCTCTGAAGACTCCACCCAGAAGTATTGATGCTAGTCTGAGCACTCCTTATAATGTTTGATCACAAGAGTTTATTGATTATTGCTGCTTTGTCACTTACCTAATAGTTCTTAAATTCCCATGTTGTCCTCATAACTAGATTGTGATTTGTTTTGAGATTCTTATGACCGTACAGGTCATAAGATGTAAACATTACTTGCAGCATGTGTCTGTACCTATGTATTTGTTTAGGGGAGAAATAATCTTGACTTTAAGTTTTTAAACATCTTGTTCCTATTTTAAAAAATGACATGTGAATCTGAAAAGCTTAATTTAGTAGTAAGGAAGTAAAATGCTTGGTCTTTGGTAGCTTTTATCGTTTATCCCACTGTTTGGCATTCAGTGTTCTGTAGCTTTTAATTCAACAAACCCACATGAAGTCCCTCCTCTTTGTGCTTTTTCTGAATAG
Seq C2 exon
ATGGATTACATGTAAATCTTTACAGCCAGAGACTTGTGAAAGAATCATGGATACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAGCCAAAAAAGTGAACATCAGCATCATCCCTCCGCTTGTCCTGCTGCCTGTCTTCCTTCATGTGGCTTCCTGGCATTTCCTCCTGGGGGTGGTGGTTTTGACCTCCCTTCCTGTGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGACCAAAGGGTTCCCTGGGGCAGACATGTCGGGCAGTCTCAACAATCGCACAACAAAGGATGACCCCAAGGGCTCTTCCAAGATGCCAGCTGGAAGCCCCACCAAAGCGAAGGAGGACTGGTGTGCCAAGTGCCAGCTGGTGCGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGTGAGGAGAATGGATCATCATTGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-ZDHHC23:NM_173570:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)