MmuINT0178297 @ mm10
Intron Retention
Gene
ENSMUSG00000036304 | Zdhhc23
Description
zinc finger, DHHC domain containing 23 [Source:MGI Symbol;Acc:MGI:2685625]
Coordinates
chr16:43973468-43979093:-
Coord C1 exon
chr16:43978908-43979093
Coord A exon
chr16:43974167-43978907
Coord C2 exon
chr16:43973468-43974166
Length
4741 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACTCTGTTCTCTCTGAATAGATG
3' ss Score
9.79
Exon sequences
Seq C1 exon
TGCCTCATGGTGACAGGTACAAATCCGTACACTAAAGGGCAATATGAAGCCAGTCAAAAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGTTGCGAATACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAAGACCTCGATGAAGGCTGTGACAG
Seq A exon
GTAAGCTTACAGTTTCCAGATGCTGACCCCACTGGTTCTGTTGAGACCTACATATGTATATATATTCCTTCAGGTTTGCCGTCCAGAATGCTGAGGTTTGTTCTTGCTATTCCAAAGGATCTAAAATAGAGGATTGGTTTTTTGCTGTCAGGTGTGAGGATTTTAACAGTTTTCATTTTAAAGGATCATGGAGGATAGTAGGGTAGATTAGATGTATATAAGAACGCAATCCAGCACACACACTGCAAGTTTAAATGGACACTCCAGAAAGTTCTGTATTTTCAGTGATCTTAGTAGGACCCATGCATGGGGTTGTTCTCACGTGGTCACATGAACTTGAAGGGTAAAAGATAGCTTCTCTGTTCTCAGTTCACCCTGTATTTCCAGAGAGAGAGGCCATGTACACCTTGTGGGGAGTGACTGTTTTTCTGTGTGTAGCAACACAGTCCTGGTTGGAATATTGTCTTATCTTTGGCCTTTACTTTTACCACAATCTCAGCGATGGAGATTGCTATCTAAAAAGAGAGTTTTTAACCTCTGTTAAAACCAGTTTGTATCAAGCAGCAATAAACTGCTTTTAGCCATTTTTCTAAATATATATATTTTAAACATCTGCTTATGGAAGGCATAAAGTGATAGGAAGAGGGATGTTGGAGACAAGCTTTTCCCAGAAATTGTCCCTTCTGGCTACACAGTCATGGTGACTGTAGATTGTTAATCAGGCCAAGAACAGCTTTGCATGGGGACCACTGCAGTCTTCTGTCACTCTTGACTGGTAAAGCCCATTACCTCTTTGTTCCTTGTCTCTTTCTATAGTATTTCTTTTTAAATAGGTAGCCTTAAATATAGCTTCTTGAGACTTAGTCTAAAATCCATCCTGAGGAAAATAGAGCACTTTGCACTAAGGAATGGAGAGTGTATGCCAGTTCCATAATGGCCATCATTCAGGAAGGACCATGGCTTTGCCACTAACTTTGCTAACTCTTCCTCTCTCCTAGCCCTTGGGGCCTGAGCTGTCCTGAGTTCTCTCCTCTGCCCTATCTTTTTTCCTGGAGACAGGCTGCCCTGTTCCCACCACTCCTACTACTCTCTGACTCCAGGTGATATCTCCCATTCACTTTAAGGTGTGTCGTGCCTTTAAAAAAAAAGCCTACAGTTATTTTTACCTAAACTACCTTTTCTTTCTCGCCTGTCTTAGTCCACTTAGGCTGCTGCAACAAAATACTTCAGAGTGGGTACATTACAAGTGATGGAAGTGGACTGTCTACGGTTCTAAAGGTGGAGAAACCCAAAGTCCAAGTGCTGGCAGATTTAGTATCTAGTGTGGCCCCTCTTCCTCATGGGTGGTATCTGCTCAGTGTATCCCCACCCAGCAGAATGGATGAAAACCCTGCCTTTCTTGGTCTTCTTTTGTGTGGATGTTAATCTCATCCACAGTGTGTTCTGTTGACCTCACACTTCCCAAGAGCCCCACCTCTGAATAAGATTGCACCGAGAGTTAGGTTTGAACTACATGAATTTTAGCCACTAATATTGGATCATTTGCAGTCTACCTCTGCCCCCTCCAAAGAATGTCTTCACATGAAAAACATACCCCGTACCTCCTAACAACCTCCAATATTTAATCATTCAAATGTCAGCACAGACATCTTAAGTTTCCAGAGTGGTCTGGGTGGCATCGAGTAAATCAGAAATGGGTGAAACTCATGAAGGCCTCTGCATGAAGCTGTGGGCCTGTGACTAACAGGCTGTTGGCAGTAGAGAGGTTAGGAGTGCTTCTTGCTCTTGCAGAGGACCAGGGTTCAATTCCCAACACCCACGTGAATCTACAACTGCCTGTAATTCCAGTCCCAAGGGAGCCAACATGGTCCTCTGACCTCAGTGGGTACGAGGCACACATGTGATACATGGTATATACATGTAGGCAAAACACTGTACACATAAACTAATAAAAAGTAAAGAAGAAATAACAGACTGTGAACTTTCAAAACACAATAGTGGGACATTCTTTGAAAGACATTCCCAGGGTGGGAAAGAGAAATGAGAAAAGGAATGGCACATCCCATACCCACAGGACAAATGACATGTGTGATGCAAATATCCTACCTTCCAGACACAGTGCTGAGCTAGAAGTATGGCTTTGCTCCTACTGTAGCTCTCATGCATTGGAGTCTTGTGGTTGCACAGAGCTTGTGGGTGGCTGGCTCCACCATCCTGGGTCCTGGTCAGTTCTTCCCCTACAGCTTTCCTAGGCATTGCCTGGTGAGGCTCTCTGCAGTGGTCCCATACCCACTGGTACACAAGGCAATGCCCTCATGAGGGCTCTGTGGTACTTCTTGGCCTCAGCCTTGACATTCTTTGGGACATTGTTTGACATCCACGTGGATAGAGTAATGCCTCCACAGCTCTTGTATTTTTTGGGGCTGTAGAACTGGGAGCAAATGATGCCACCCACATTTACCGCTGATGCCCTTGGGAGTAGAGGCCTCAGTAGTTTACATTGCACCTGGGAGTATCTGTGGGACGAGGAATGTGGGGAACAGAGATTTGATGTGGTACTAGGGAGTGGGTCCTGAAGTTTCATGGGCGTTCTGAGCCATTTTCTGTGAAACCATGCTGCCATTGTGTACCTGGCATTGGAGGCTTCTGCCTGGAGCACAGTCACACCCAGAGCTTTAAAGGGTCATCCTCCTGTGGTCTTGGTGCATACCCCAGGGCCCATCCATACTGATCTCAGATGCTCTCCTCCACACAGGCTTGCAGTTACTGTAAAGACAGGTTCAGAGGCCAAGAACTTTCCAAGTCTTCAAGTTATGTTTCCCCTTTGGTTATACATTTTTTTTCTTTAAAGTCAGTGTATGTGTGTTATATGTATTGTGTGTGTTTCTGTGCACACACACATATGTGCTCCTGGTGAAAGTGTTTGATGTCAAGTGACTTTCTGAATCGTTTCTCTGCCTTATTTTTTGAGACAGAGCCTTTCAGTGAGCCTAGAGCTCCTTTATTTTGGCCAGAGTAGCTGACCAGCAAGTTCCTGGAATCCCCCTGTCTATTCCCCTCACTCCCCACAGCACTAGACTCTAAGTGCATATCCCCACGCCTTTTTATTTTATAACGCATGTGCCTGAGTATGCATGTGTGTTCCGTGGCTTTGATGTGTAGGTCAGAGGACAACCTGCCAGTCGGTGGCCCGTGAAGACTGAACACAGGTCGTCAGCCATGGTCACAAGCACCTTTATCCACCGAGTCACCTTGCCAGCTCCATGTCCAAATTTTCACACGAGTACAGAGGATCTGAATTTGTCCCTCTTGCTGTCATGGCAAGTGCTTTGCCAACTGAGCCATCAACCTAGGCCCTAAAGTAGTAGTTGTTGTTACTGTTGTTGTTTTTACTGTTATTATGTTATTGTTTGTATATGTAGTTGTATATAGGCCAGAGATTGTCAGATGTCTTGTGAAATAGATCCCCACCCTAATTTTTGAGTGAGGGTTTCTGGAGCTAGCAAACTGGGCAGGTTGGGTAGCCAGTGAGCTCTGGGGAGCCACTGCTCTCTCCCTAGTGCTGGGGTCACAAATGCTTATTAGCACTGTGCCTACCGTTTTACACGGATGCTGGAAATCTAGACTCTCGGCCTCATGTTTGAACAGCAAGCATCTGCCCACCAGACCTTTTCCCTAGCCCCTCCTTCCTTTACTCCCACTGGAGCCTGCGTCCAGGAGAAACTGTGCAGCCCCCCAACACTTTAGTTAATCCTCTGTTCTATTGCGCCTCAGTCCTACCTCCTAAAGAACACTAGGACCTGAACACAGTTCAACTACCTGCTTCATAAATGGCGTTCTCTGCTATATCTTCATGTGGTGGAAGAGTTTATAGGCTCCTGGGGCCTCTCTTATATAGGCCCTAATCCCATTCATGAAGATTCTCCTGTGATTTGTGACCAAATCACCTCTTACAAGACCACCCTCCGGAAGTCTCTCCATATTGTTTGCTCTGGCCTTGAATTACTGGGCTCAGATATCCTCCTGCCCCAGGCCCTCATGCAACTGTGAATGAAGGTGTGTGCTACCACACCCCACAGCTTCACCTCTTAGTACTTAGGTGTTGAGAATTCTGTTTTAAAATTGGAACACTCAATAGCAGCATGCGTCCCTGCAAAGTCAGCAGACCCCATCCTGTGTAGTCATCAGACTTATTTTAGTTTGCACTTCATTTTTGCTCAGGCAGACTCCTGTCTAGGACAGCCTGGTTCACTCCCAGGGCACAGGACAGGCTTTGAATGCACCTACCTCTCTTCAGTGAAGCACTCCCTTCCATTGCTAAGTGACCATCAAGGTTAAGTACAGCCCACACCCTCCCACTAAGCACCTTTGATGTCTGTCCCCTGAGCTTAAGACCTCCCTGGAAGACCATTACCGCTTACCTAATGCCTTTTGAATTCTCACTGTCAAGATTTTATTTTAAAGATTCATTTGAGTGTACACCACTCAGGTCTAGACATTTGTCCAGAATATGTGTATGTAGCCGTGTATTTAGGAAAGATGGCTGATAGTTAACATTTATAAGCATTGTCTTCCTATTTTAAAAAATGATACATGAATCTGAAAAGCTTGTGTTTAGTACTGTGAGAATAAAACGCTGGCTTTTGCTGTCTTACCATTTCTGCTGCTGTTTGACATTTGGGGCCCTGTAGGTTTTCATTCACCAGATCCACATGAAGCACACTCTGTTCTCTCTGAATAG
Seq C2 exon
ATGGCTTACCTGTCAATCACTTCGGCCGGAGACTTGCGAAAGAATCACGGATACAATTTCTGACCGCCTCCGAATTCCTTGGCTCAGAGGAGCCAAAAAGGTTAATATTAGCATCGTCCCTCCACTTGTGCTTTTGCCGGTTTTCCTTCACGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTTCCCATGCTGGCACTCTGGTATTACTACCTCACTCACAGAAGGAAAGAACAGACGCTGTTTTTCCTGAGCCTCGGGCTGTTCTCACTGGGCTACATGTACTATGTGTTCCTGCGGGAAGTGGTCCCCCAAGGGCGCGTGGGGCCCACTCAGCTGGCCCTCCTAACCTGCGGGTTACTTCTGATACTCTTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAATGACAAATCCCCAAGCAACAGCCAAATTGAATGCCCGGTCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGACGCCTCGGGGAGCCTCAACAACCGCACACTGAAGGACGATGTTAGGGGTTCCTCCAGGGTGGGGCTTGACAGCCCTGCCAAAGTGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTACGACCCGCCCGGGCATGGCATTGCCGGATATGCGGTATCTGTGTACGGAGAATGGACCATCATTGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036304:ENSMUST00000036321:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(52.0=45.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types