HsaINT0185239 @ hg38
Intron Retention
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr3:113948794-113954410:+
Coord C1 exon
chr3:113948794-113948963
Coord A exon
chr3:113948964-113953699
Coord C2 exon
chr3:113953700-113954410
Length
4736 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TTTGTGCTTTTTCTGAATAGATG
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTGCAAATCATGACACAGAAGGGCAGTATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
Seq A exon
GTAAGAACAGAGCATTTCTTGACGCTGGCCCCATCACCCTTCTGAGAACTGCCATGTGTACTTTCAACCTAGCCACCCAGAATGCTAGAATTTGCTCTTGATTCTATTTCCAAGCATCTAAAATGAGAGTTGGCTTCTGTGTCAAGTGTGAGGATTTTAGAAAGATGGATTACGCAGTAGTGCACAGCTGTCTGTCTGCTCTGTTTTATAGGATATTATTTTTCGTTTAAAGAGAGATGAGGGAGAGAACAGGCAGTTTAAAGGGATAGTAGGCAAGTTAGTATAAAATAAAATGCAAGCCAGCAGAATCTGTAAGTTTAAAATGAACACAATAGTTCCAGAAAGTTCCTGCCTTCTCAGAGGTCTCAGCATTTAGAGACTGACTACTTGGGACTGGGTGGCACCTGACCACAGAGGGCCTTGTGGGTTGAAATTTCATTTTCCTGCTGTTAGTACTGGTCTTGCCCCTTGTTTCTGGGGAGGAACTCCAGCCAGAAGGCATGTATCTCCCCTGGATTCACAGTTTTCAGTGCGACCAGCAACACTCTTGATTGATCATACTGTATTTGGCTTTTATTTTCCAAGTGATGGAAATTACTATCCAAAAAGAGAATTTTTAACATCACTGAAAAAATTTGGTGTCGGACAGTGAATAATCTGGTTTTAATCCATTTTCTGAGTAATTATATATTTAAAAATCACTGTCAATGGAAGTCATAATGTGGGAAGGATAGGGATGTTGGAAACTTGCTTTTCCCATTAATAATTATTTCTGGTTAAAAAAGTCATTGCAACTGCCAATTTGTTGACTTAGAACTTGATACATTAATACAGCCATGAAAAGCATTCCCTGGGGTCTGCAGTCTAGTACCAGCCTTGACTATTAAAAACCCAGTGAACCCTTTGTCGTTCTTACTTGACAGTGTACTGTGTAGTCTTTTTTATGGATGTCTTTGAATATAGGTTCTTTAGATTTAGTCTGAAATCTATACTGAGAAAATAGAGCACTTTGCACTAATGAATGGAGAAATGATGCTGTTTCCATAACCACCATCACTCAAGACCGCAGCTCTTCCATTAACCTTGCTAACTCTTCCTCCCTCCTAGCCCTGGAGACCTTGGCTGTCCCCTGAGGCATCTCCTCTGCTCTCTCTGTACCCCTCTCCTCTGTGTTTCCACCGTGCCTGCTGCTCTGTATGATTCCCAATTAGTTATCTCTAAGTTCTAGTCTTACCTTTAAAAATTGTCTAAAATCAAAGTTACCTTTCCTTAAACTCTACCTTTTCTTACTAGCCTGTCTTAATTTGTTCAGGCTGCTATGATAAAATAAATACCTGAGACTGGGTAATTTGTAAACAATATACATCTATTGCTCACAGTTCTAGAGGCTCAGAAATCCAAGATCAAGGCACTGGCAGATTCAGTGTCTGGTGAGGGCCCTTTTCCTCATAGATGACACCTTCTTGGTGTGTCATGACATGGCAGAAGGGGTGAATAAGCTCATAGGGCTCTATTATAAGGGCACAAGTCTCATTCATGAGGGCTGTGCCTTCATGACCTAATCACCTCCTTAAGGTCTCACCTCTGAATACTATTGCATTGGGAATGAGGTTTCAACATAATGAACTTTGGAGGGACACAGATACTTCCTGGCTCCCTAAAATTTATGTCCTTCTCACATGCAAAATACACTGATTTCATCCTAATAGCCCCAAAAGTCTTAGCTCATCCCAGTGTCAATTCAGAAGTCTAAGTCCAGAGTCTGGTCTGAATATCATCATCCAAATCAGATATGGATGAGTTTCAAGATACGATTCATCCTGAGACAAGTTCTCCTCCACATGTGAGCCTGTGAAATCAAACAAGTTAGGTGCTTCCACAATACGATGGTAGGACATGCATAGAATAGACATTCCCATTCCAAAAGGGAACAACAGGAAGAAAGGAGTGTTACTGACAGGTCCTAACCCAGTGGGGCAAACAATGTTAAGCCTTAATAAGGCTTGAGAATAATCTTGGACTTGATGTCCTGCCTTCTGGACACACTGGGTTGGCGGTTGGGCCCCCAAGGCTCTGGGTGTCCCCGCCACCACAGCTTTGTTGCGCACAGCCCACACTGCAGCTCTCATGGGTTGGAGTTCCTACAGGTGCCTCCAGCTCTCCCAGGCTGGAGTTGTATGCTTGTGGCTCTACGGGGCTCTTGGGGGTGACCCTGTCCCCACAGCTCCAAGCAGGCATTGCCTCAGTGGGGTCTCTCTGTAGTGGCCCCACCACAATGACAGCTCCACTGGGCAGTGCCCTAGTGGGGGCTCTCTGTGGTGGCCCCACCCCTGTGGCAGTCCTCTGCCTCGGTCCCGAGGCTCTCCAGGGCATCCTTTGAAGTCTAGGTGGAGGCAGCCAGGCCTCTACAGCTCCTACACTCTGGATGCCTGCAGCATTGGCACCCTGTGGATGCCACCAAGATTTACCACCTATGCCCTTCAGAGGGGTGGCCTCTATGGCATACCTAGGCCCAGTGGAGCCACACCTGGAGCTGCCATGGAGGGTGCACCAGAATGTAGGGAGCAGAGACTTCAGATGGCACTCAGCAGTACACCCTGAAGCCCCATGGGTGCCCTGGGCCCTCTTATGAAACTGTCTGCCCTCAAAGCCCTGGCACTTCAGGTTTGTGGTGGGAGCAGCAGCCCCAAGGATCTCCGAATGCCTTCAGGGTCCTTCCATTGTCTTGATGACTGGCACGGGGCTAATCCATACTGATCTCATCTACATCCTTGCTGTTCTCTCCCAAACATGCTTTCTCATTTGTTACAATATAGACAGGCTGAGAATTTTCCAAATCTTTGTTTTACTCCCCTTTTGATTATGAGTTTTGTCTTTAAATTATTTCTCTTTGGCTGGGCGCGGTGACTCACACCTGTAATCCCAGCACTTTGGGAAGCCCAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGAACGACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAAGTAGGAGAATCGCTTGAACTCAGGAGGTGGAGGTTGCGGTGAGCTGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAATTTCTCTCCTGCATTTTACCCTAAGCATTTATGAGAAGCCATGCAGCACCCTGAACACTTTGCTTAGAGATTTCTACTGCCAAATATTCAGTTTAATCACTCTTGAGTTCTACTTTCTACCAAACAGTAGGACACAAACACAATTCCACTGAGTTCTTTTTATAAGTGTCCAGGATCACCTTTCTTCTAATTTCCAATAACATGTTTGTCACTTCCATCTGAGATCTTATGAGAATGGCTTTTACTGTCCATATTTCTGCGAGCCTTCTGTTCATTACCTCTTAGGGATTCTCGAAGATTGAGGCTTTCTCTGCAGCTCTCCTCTTCTGCCAGAATCACCCTTGACAGTTTGTTCAGATAGTCTAGGATTTTTCCCAGCATGCACTTCCACACTCTTCTAACCTCTACCCGTTACCCGGTTCCACAGCTGCATCCACATTTTTAGATATCTGTTGTAGCAACATCCTACTTCTTAGTACCAATTTCTGTCCTAGTCTGTTCAGGCTGCTGTAACAAAATAACTTAGGCTGGGTAATTTATAAACAACAGATATTTATTGCTCACAGTTCTGGAGGCTGTGAAGTCCAAGATCAAGGCAGCAGCAGATTCAGTGTCTGGTGAGGTCTCCTCAGCTTCATAGACAGCACCTTCTTGCTGTGTCCTCACATGGTGGAAGGAGCAAACAGGCTCCCTTGGATCTCTTTTTTAGAGGCATTAATTCCACTCATCAGGGCTCTGCTCTCATGACCTAATACCCTCCTAGAGGCCCCGTCTCTTAATACTCTTGCATTGGGGATTGGGTTTCAGCATATGAATTTTGGGGGCATAAACATTTAGAACATAGCATAGCCTAAGTGTGCAAAACAGTCAACCAATATCATTCCATTCACCAAGTTCAGTGATTTGACTCATACTAGTTTGATCTCCATTCTTCTCTATGTAGCCCTGTCCCTGTGGGACTAGTCTACTCCCTGGGCTCATGCCAGGTATGTGCTGCACACATTTCTTTCCACTGGAAGGCCTTCCTTACTCCCTCTCTATTCATACACATGCTAGCTGGACATCAAGGTTGAGCACAGATCCCACCTTTTCCACAAAGACCCCTCTGAAGACTCCACCCAGAAGTATTGATGCTAGTCTGAGCACTCCTTATAATGTTTGATCACAAGAGTTTATTGATTATTGCTGCTTTGTCACTTACCTAATAGTTCTTAAATTCCCATGTTGTCCTCATAACTAGATTGTGATTTGTTTTGAGATTCTTATGACCGTACAGGTCATAAGATGTAAACATTACTTGCAGCATGTGTCTGTACCTATGTATTTGTTTAGGGGAGAAATAATCTTGACTTTAAGTTTTTAAACATCTTGTTCCTATTTTAAAAAATGACATGTGAATCTGAAAAGCTTAATTTAGTAGTAAGGAAGTAAAATGCTTGGTCTTTGGTAGCTTTTATCGTTTATCCCACTGTTTGGCATTCAGTGTTCTGTAGCTTTTAATTCAACAAACCCACATGAAGTCCCTCCTCTTTGTGCTTTTTCTGAATAG
Seq C2 exon
ATGGATTACATGTAAATCTTTACAGCCAGAGACTTGTGAAAGAATCATGGATACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAGCCAAAAAAGTGAACATCAGCATCATCCCTCCGCTTGTCCTGCTGCCTGTCTTCCTTCATGTGGCTTCCTGGCATTTCCTCCTGGGGGTGGTGGTTTTGACCTCCCTTCCTGTGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGACCAAAGGGTTCCCTGGGGCAGACATGTCGGGCAGTCTCAACAATCGCACAACAAAGGATGACCCCAAGGGCTCTTCCAAGATGCCAGCTGGAAGCCCCACCAAAGCGAAGGAGGACTGGTGTGCCAAGTGCCAGCTGGTGCGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGTGAGGAGAATGGATCATCATTGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307:ENST00000330212:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains