RnoINT0167499 @ rn6
Intron Retention
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61662256-61667878:+
Coord C1 exon
chr11:61662256-61662527
Coord A exon
chr11:61662528-61667167
Coord C2 exon
chr11:61667168-61667878
Length
4640 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTTCTGTTCTCTCTGAATAGATG
3' ss Score
10.05
Exon sequences
Seq C1 exon
GCGTTGGCGTTAATGAGAAGTGAAGATGTGTTTACAGGATGTGAGTTGAGTTCTCTCCACCTTTACCTTCCGAGAGCTGCTTCTTATGCCTCATGGTGACAGGTACAAATCTTTACGCTAAAAGGCAATATGAAGCCAGTAAAAAAAAAGAAAACCGAAGAGCCTGAATTGGAGCCCCTGTGTTGCTGTGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAGGACCTCGATGAAGGCTGTGACAG
Seq A exon
GTAAGCTTACAGTTTCCAGATGCTAACCCCACTGGTTCTGTTCAGACCTCCATATATCCTTTCAGGTATGCCATCCAGAATGCTGAGTTTTGCTTTTGCTATTCCAAAGGATCTAAAATAGAGAATTGTGTTTGCTGTCAGGTGTGAGGGTTCAGTTTATGAGGACTTCAACAGTTTTCATTTTCAACGATGATGACGGGGGTAGGAGGTGCGGATAGTAGACAGATTAAATGTATTAAAGAACACAGTCCAGCACAAACTGCAGGTTTAAATGAACATTCCAGAAAGTTCTTATATTCTCTGTGATCTTAGTAGATAGAGCCCAGGCATGGGTCATTCCCACTTGGTCACATGGGGCCTGGAGGGTGAAAGATGGCTTTTCTGCTCTCAGCTTACCCCTTGTTTCTGGGAAGAGAGGCCGTGTACACCCTGTAGAGAGTGACTGTTTATATGTGGGCAGCAATACTGTCCTGATTGTAACATTGCCTAATCTTTGACCTTTTCTTTCACCACAATCTCATCGATGGAAATTGCTATCTAAAAAGAAGAGTTTTTAGCATCAGTTAAAAACATTTTGTATCAAGTAGCAATAGACTGGTTTTAGCCATTTTTCTAAATATATATTTTTAAATGCCTGCTTATGGAAGGCGGTAATGTGAGAGGAAGAGGGATGTTGGAGACGAGCTTTTCCCAGAAACTGTCCCTTCTGCTTACAAAGTCACTGTCAGTATAGATTGTTAGGCCAAGAAAAGCTTTGCATGGAGACCACTGCAGTCTTCTGTCACACTTGACTCTTAAAGCTCATGTCCACGTTGTTCCTTGTGTAAATAGGAAGCCTTAGATATGGCTTCTTTAGACTTAGTCTAGGATTCACACTGAGGGAATTAGAGCCCTTTGCGCTGAGGAACGGAGGAAGGGTGCCGTGTCCACAGTGACTGTCACTTAGGACTGCAGCTTTGCCGTTAGCTCTGCTGACTCTTCCTCTCTGCTAGCCCTTGGGGCCTGGGCTGGCCCCTGAGTTCTCTCCTCTGGCTGATTGCCTTTTTCTGGAGGCAGGCTTCCGTGTGTCCACCACCCTGCTGCTCTGTGACTCCAGGTGATATCTCCGACTCACTTTAAGGCGTCTCAAATTACCGTTGCCTAAACTACCTTTTCTTTCTTGCCTGTCTTAGTCCACGCAGGCTGCTGCAACAAAATACTCCTGAGTGGGGTACATTACAAGTGATAGAAGTGGACTGTCTGGTTCTGGAGGTGGAGAAACCCAAAAGCAGAGTGCTGGCGGACTTAGTATCTAATGTGACTCCTCTTCCTCATGGATGGCACCTGCCCACTTCATCTGCACTCAGAATGGATGAATGCCCAACCAAGAATGGTCTTAATTTGTGTAGATATTAATCTCTTTCACGAGATGTCCTGTTGACCTCACACTTCCTAAGAGCCCCCACTCTGAACAAGATTGCATTGAGAGTTACGTTTGAATTTTAGCCACAAATATTGGCTCTGTAGCAATTTACCTCTGCCCCCTCCAAAGAATGTCTTCACATGCACAATACACCCCACCCCCGTAGCTGCCAACCTCCAAAGTTTAATTGTTCAAGTATCAGCACAGACATCTTAAGTCTCCAGAGCGGTCTAGATGGCATCATCTAAGTCAGAAATGGGTGAAACTCATGAAGGACCCACAGCTATGGGCCTGTGGCTAACAGGCTGTGGGCAGAAGAGAGGTTAAGAGTACCTCTTGCTCTTGCAGAGGATCGGGGTTCAATTCCCAACACACTTATGGCATCTTACAACTGCCTGTAATTCCAGTCCCAAGGTATCTGACCTCAGTGGGTACAAGGCACAGACATGATGCACATGCACGCATGTAGACAAAACACTTGTACACATAAAGTAATTAAAAAGTAAAGAAAGAAATAACAGACTGTGTACTTTGAAAACACAACAGTGGGGCATTCAGTGAAAAACATTCCCATGTCAGGAAAGAGAAATGAGAAAGAAAAGTAATGGCAGGTCCCACTCCTACAGGACAAATCACTTGTGATGTAGACATCCTACCTTCCAGACATGCTGAGCTACAAGTTGGACCCTAAGGGCTTAGCTCATACTGTAGCTCATGGGTTGGTGTCTTGGGTCTGCACAGAGTTCATGGGTGGCTGGGTCCATCCTGGGGTTTGAGGTCAGTTCTTTCTTACAGCTTCACTAGGCACTGCCTGGTGAGGCTCTCTGCAGTGGTCGCATACACAAGAGTATCCTCACGAGGACTCTGTGGTAGTTCTTGGCCTCAGCCTTAATATTCTCTGGAACGTTCTTTGACATTCATGTGGATATGGAAATGCCTCCACAGCCCTTGTATTGTGCAGAGCTGTGGAATTGGGAACATATGCTGCCACCCACGTTTACTACTGATGCCCTTGGGAGCAGTGGCCTCAGCAGCCTACGTTGCACCTGGCCTTACCTAGGGTTTCTGTGGGACGATGAATGTGGGGAACAGATTTGATGTGGTACTAGGGAGTGAGCCCTGGAGTTTCATGGGCATTTTGAGCCATTTTCTGTGAGACCGTGCTGCCATTAAGGCCCAGGCATTCTTGGCTTCTGACTGGAGCACAGCCCTTCTCAGAGCTTTAAGGGCCATCCTCCCATTGTCTTGGCCCATACCACAGGGCTCATCCATACTGGTCTCATGATGCTGTCTCTCACACAGCTTTCCGTTACTGTAGATAGGTTAAGAAGGCCAATAACTTCCCAGATCCTCAAGTTACGTTTCCCTTTGTTATTTTTTTCTTTAAAGCCATTGTATATGCATTACACGTAGGTCTATGTGCACCAGTGTTCCTGGTGGACAGTGTTTGATATCAAGTGTCTTTCTAAATAGTTTCTATGTCTTATTTTTTGATATAGTGCCTCTCACTGAACCTAGACCTCCTCTTTTGGCCAGACTAGCAAGTTTCAGGAATCCCCCTGGCTGCTACCCCACTCCCCACAGCACTAGACTAAAAACTCATACCCCCACACCTTTCAGTTTTTATAATAATGCACGTGCCTGTGTATTCACGCGTGTCCCATAGCTTTGATGTGCAGGTCAGAGGACAGCCTGTTGGTTAGTGCTCTCCTTCCGGCATGTGGACTATGAAGATTGACCGCAGGTCATCAGCCAAGGTCACAAGCACCCTTATCCACTGAGTCACCTTGCTAGCCCCTTATCCAAATTTTCACATGGGTACTAAGGATCCAAATTGATTCCTCTTGCTGTAGGGCAAGTACTTTGCCAACCGAGCCATCATCCTAGGCCCCAAAGTAGTACTTGTTATTGTTGTTACTGTTATTTTATTGTTTGTATGTGTATTTGTGTATAGGCCAGAGATGTGTCAGATGTCTTACGCAATAGATACCCACCCTAATTTTTGAGTCGGTGTTTCTTCACTGAATCTGGAGCTCACTGACTGGGTAGGCCGGCCGGCCAGTGAGCTCTGGAGAGCCACTGCTCGCTCCCCAGTGCTGGGATTACAAATGCTTAACACTGTGCCTGCCTTTTTACATGGGTGATGGAAATCTAGACTCACGGGCTCATGTTTGTACGGCAAGCACTTTGCCCAGCAGACATTTTCCCCAGCCTGTCCTTTCCTTATTCCCACCGGAGCATGAGTTCAAGAGAAGCTGTGTAGACCCCTGACACATTGATTAGAGATTTCTCCTGTTAATACTGTTCCATTGCTCTTCAAGCCTACCTTCTAAAGAACACTAGGACGTGAGCACAGCTCAACTCCCTGCTTCGTAAGGTTCATAAGGCTCCTGAGGTCCCTTTATAGAGGCCCTAATCCCATTTTTCGAGGATTCTTCTGTGATAGGTGACCAGATCCCCTCTTACAAGACCACCCTGCTGGAGTCTCAGGCTATTGCTCTCTCTGGCCTTGAATTGCTGAGCTCAGAGGTCCTCCTGCCTCAGGCCTTCATGCAACTGTGAATGCAGGTGCCTGCCTCCAGGTCCAGCAGCTTCTTCCCTTTGTGCTTAGGTGTTAAAGATTCAGTTTTAAAACTGGAACACTCAGATAGCTGCATGCCTCCTGCAAAGTCAGCAGGCCCCATTCTGGGCAGTCATCGACTTACTTTAGTTCATTCTGCATCTTTGCTCAAGCAGACTTCTGTCTAGGACAGCCAGGTTCACTCCCAGGGCCCAGGACAGGCCCAGAGGGCACCTACCTCTCCCCTGAGACACTCCCTTCCTTTGCTAGCTCAGGGTTAAGTACAGACCACGCCTTCCCACTGAGCGCTGAGCATAAAGCTTCCTAGGAAGACCGCTGCGGCCTACCTAATGCCTTTTGAATTCTCACTGTCAAGTTTTGTTAATTTTAAAGATTCATCTGATTGTATACCACTTAGGTCTATTGTATTCCACATTTGTATGGAATATATGTATATACCTGTGTATGTAAGAAAGGTTGCTGATAGTTGACATTTATGAGCATTATCTTCCTATTTAGAGAAACATGATAACGTGAATCTGGAAAGCTTGCGTTTAGTACTGAGGGAATAAACTGTTGACTTTTGGTGCGTTATAACTTATGCTGCTGTTTGACATCTGGGGCCACGTAGGTTTTCATTCACCCTGTGAAGCACGTTCTTCTGTTCTCTCTGAATAG
Seq C2 exon
ATGGCTTACCTGTAAATCGCTTCGGCCGGAGACGTGTGAGAGAATCACGGATACGATTTCTGATCGCCTCCGAATTCCTTGGCTCCGAGGAGCCAAAAAAGTCAATATCAGCATCCTCCCCCCACTCGTGCTCTTGCCGGTTCTGCTCCGCGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTGCCCATGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAGCAGACGCTGTTTTTCTTGAGCCTCGGTCTGTTCTCCCTGGGCTACATGTACTATGTGTTCTTGCAGGAAGTGGTCCCCCAAGGGCACGTAGGGCCCGCTCAGCTGGCCCTTCTCACCTGCGGGTTATTTCTGATACTCGTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAACCCAGCATGCAATGACAAATCCCCCAGCAACAGCCAAATCGAATGCCCGATCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGATACCTCGGGGAGCCTTAACAACCGCACACTGAAGGACGATGCTAAGGGCTCCTCCAGGGTGGGGCTTGACAGCCCCGCCAAATCGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTGCGGCCCGCCCGGGCGTGGCATTGCCGGATATGCGGTATCTGTGTGAGGAGAATGGATCACCATTGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348:ENSRNOT00000079423:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]