HsaINT0185546 @ hg19
Intron Retention
Gene
ENSG00000249760 | ZFP82
Description
NA
Coordinates
chr19:36898789-36900769:-
Coord C1 exon
chr19:36900683-36900769
Coord A exon
chr19:36898916-36900682
Coord C2 exon
chr19:36898789-36898915
Length
1767 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TGTGTGGTTTGTCATTTCAGCGA
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATCAGCCTCTGTGGACTCGGTGCTTCTCCTGGCAAGTAAACCCCAAGGAGGACTGACCAGTTCTTGAATTTCTATACCATGGCCCTT
Seq A exon
GTAAGTTTTTTTCTCCTCCTAGGAATACTATCATGTTAAGGTTCTGTGACCATTTTTTTATTCTGAAACTTCCTTACTATCAGAGCTCCATCCAAGAACCTTCTTCCAGTTCTTCCAAATCCAGTGGCGGGTGAACCACAATGCTTGTCCTATGAACACTCTTTATTCTAGTCATTGTTCTTATCTTTGTTGAACAAATTATTCAGCATCTCCTATATGTGCTCAGTCTTCTGCTAAAAGCTGCAATGGAGGAAAAATGAAATCTCTTAAATATTTGACCATGGGCCCATTTAGCCACTCATAGGAAAACTGAACTTTGAGTTTTCCAAGTACGTAAGATAAGGGTCGTGGCTGGGCATGGTGGCTTGCACCTGTAATCCCTCCTGTTCAGGAGGTTGACATGGAGGATTGTTTGAGCCCAGGAGTTTGAGGCTCCAATGAAGCTATGGATGTGCCACTGTACTCCAGCCTGGGTGACAGGGAGACCCTGTCTCTTAAAAAAAAAAAGTTATAAAACAAAAAGGTAAGAGTTGCTGTTAGTTGGCCTCAGCCTCAGTATATCATAAGATCTCATGTTTTGTGAGGCTTTTAGGACTGAGTAGGGGTGTGGCTAGGTCTTATAGAGAGATCTGAGATCTTTTGGAATTCCTGAGTTACACTCAGGAACAAGATTCCATTTTTGGTTGAACAGGATGTGCTGGTCTAGAATGACATCTTTGTGATTCTGGATTATGCTATATTAATATCCTTTAACTCAGGAACCAGGAAGGCATACAGTGAGGGATGGAAAGTGATAGCATGTGAGAAGGTAATCCAGGTACATAAGTAGTCACGTTGACTCCCAGAATTGAGGAGGATCTTAAGGTTTTGTCCAACCAAAATATCTAAGTATAAAAGAATGATTAAATCTCATATATGCATTGTATAGACTATTATATAACCAATTTTTGTTTGTTTTTTTTTGAGACGGAGTTTTGTTCTTGTTGGCTAGGCTGGAGTGCAATGGTGTGATCTTGGCTCACCACAACCTCTGCTCCTGGATTCAAGCGATTCTCCTGCCTTAGCCTCCTGAGTAGCTAGGATTACAGGCATGTGCCACCAGGCCCAACTAATTTTGTATTTTTAGTAGAAACAAGGGTTCTCCTGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCTCCCACCTCGGCCTCTCAAAGTGATGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTATACAACCAATTTTTAACAGTCATAATTAGAAAAATGCTTATGATATGATCTGCTTCTAGGATAAACTTAGAAGATATTCTCTAATTGCATTTAGATCCTTTTCTAAGATAAAGATATTGTAGGGAGGGAGACTTTAAAAAAAAATCTGTTCTTTAAGAAGAAAGGGGCGGAAGAACTCACCTTCCTTGGGAATTGATGAGGGAGACATAGTAGGCAAAGGCTTATATACAGTATTTCATTTAATTGGAAAACTGATTTTTTTTTCTTTCCCAGGAGTATCTAGATTATTAAGATTTGCCAGAGTATAAGAGTCTGTGTCTGTAGCAACAGAATCCTTCGGGAACCCAGGCACTTTGCTTCAGGCACACTCATTTCCTGACTCGCTGTGTTGCAGGCTTCCAGCCCAAGCCTGTTTTCTTGCCATATGATCCACTTCCTGCAATATCTCTTCCTTCTTTTCTCCTTCTACCTTAAAATACATTTTCTTCCATTTCATTTATAATGTGTGGTTTGTCATTTCAG
Seq C2 exon
CGATCAGTGATGTTCAGTGATGTATCCATAGACTTCTCTCCAGAAGAGTGGGAATACCTGGACTTGGAACAAAAGGACTTGTACAGAGATGTCATGTTGGAGAACTACAGCAACTTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249760-ZFP82:NM_133466:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCTCTGTGGACTCGG
R:
CCAGTGAGACCAAGTTGCTGT
Band lengths:
214-1981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)