MmuINT0179929 @ mm9
Intron Retention
Gene
ENSMUSG00000058447 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30851260-30853169:-
Coord C1 exon
chr7:30853084-30853169
Coord A exon
chr7:30851387-30853083
Coord C2 exon
chr7:30851260-30851386
Length
1697 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
AACAGTGGTTTGTCATCCAGGTG
3' ss Score
6.68
Exon sequences
Seq C1 exon
CCCTGGCCTCCGTGGACTCTGCTTCTTCCGAGAAATAAACTCCAAGGAAGACTGAGCAGCTGTTGGGTTTCTAAACCATGGCCCGT
Seq A exon
GTGAGTTAACTGTTCATGTTCTTTTTCTGGAAACACTGCCAGATAGCTGGGCTCTTCTCTGACTAGATGAGAAATAAAAATAACCCATTTGTTTTAACCTACATCCTGCCATGTGGCTCAGGTACCATGTGCCGGTCTCCTCATGTCTTCCTAGGCAGATCTCCCTGCACCTGGCTCTATCCCAGAATCCTTTCTCTTCCTGGATGTCCCACCTCTATTTCCTGCCTAAGCCATAGGCCATAGGCTTTTTAATTGACAGGTGATGCATCCATACAATACACAGGTATTCTCTCTGTATCCTTCCCTAGTCTCTCACTCTTGACCCTCGCCTGCAGTGTTCATCACATCTGTCCTAGCAGCTCTCTGTTGCTGTGATAAACACCATGACCAGAGAGCAATAGAGGGAAGGAAGGGCTTATTTATTTCATTTTACAGCTTGCAGTCCATTATGAAGGGAAGGCAAGGACGGAGGTACCGACCATAGAGGAGAGCTTACTGGTTTGCTCCTCGTGGCTTGCTCAGTCACCTTTCTTGTACAACAACCCAGGACCTCCTGACCAGGGCTGTGTCACCTGCAGTGGGCTGAATGCTCCCACATCAATCAAGAAAATGTCCTGTAGGGCTGGAGAGATGGCTCAGCAGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTAAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGTCAGATGCAGTGTACTTACATATAATAATAAATAAATCTTTAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAATGTCCTGTAGACATGCTCTGACTAGTGTGATAGAGTCAGTTTCTTTTATTTCTTTTTTCTTTTTAAAGATTTTACTTATTTATTACATGTATGTATGTGAGTACACTTTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCCCATTACAGATGGTTGAGAGCCACCATGTGGTTGCTGGAATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCACGTCTCCCTAGAGACAGTATCTTAATTGAGGCTCTCCATTCCCAGGTGACTCTAGCTTCTGTCAGATTGACAGAGACCAAGCAGCACACAGTCATCGTGCCTCTCATGCGCTGGAACCAGAGGCAGGTTCAGCTGCACCAGTCTACTCTTTTCCAGACAGACTGACCTATGCAAAGTATATAGCAGCTGAACGTGATGGCTCACAACCAGGATTCCTGTCTGAAAAATATAGGAGAGAGGATGGAAGTTAGAGGAGAAGAGGAGGAGGAGAAAAGTAGCAACAGGATCCTCTTGAGCATATTAGGATGTTGCTTCAGGACCCCCAGTTTTCTACCGTGTAACCTTCAGCTCTGGCAGTTTTGCTGACTGCACTGGCCCACTTGTGAGCCATGGTAGTGCATGCTTTTAAATCCAACATTTTGGAGGTAGAAGCAGCTGGAGCCTGTGAGACCAGTCTGGGCGACATAGTGATGAATGAGCTCCATGGGACACTTCCCACAGTGCCTCTTTCATACTTCCTCCATAAACGATGCTTTAAAAGTGCTTTAAAGTCTCTTTTCTGCTTTAGCTGTAACAGTGGTTTGTCATCCAG
Seq C2 exon
GTGTCAGTGGTGTTCAGTGATGTGTCCATAGCCTTCTCGCAGGAGGAGTGGGAGTCCCTGGACTTAGAACAGAGGAATTTGTACAAGGATGTGATGATGGAGAACTACCACAATGTGGCCTCGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058447-Zfp82:NM_177889:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTGGACTCTGCTTCTTC
R:
CTAGCGAGGCCACATTGTG
Band lengths:
206-1903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: