RnoINT0168672 @ rn6
Intron Retention
Gene
ENSRNOG00000053115 | Zfp82
Description
zinc finger protein 82 [Source:RGD Symbol;Acc:6499485]
Coordinates
chr19:14459450-14460087:+
Coord C1 exon
chr19:14459450-14459630
Coord A exon
chr19:14459631-14459960
Coord C2 exon
chr19:14459961-14460087
Length
330 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
GTCAATGGTTTGTCACGCAGGTG
3' ss Score
6.84
Exon sequences
Seq C1 exon
ATAGCAGCTGAAAGCCATGGCTCCTGACCATGATTCCTGTCAGAAAAACAGAGGAGAGAGGATGGCAACAGGATCCTCTTGGACACATTAGAACCTTGCTTCGGGACCCCCATTTCTTCTATCTTATAACCTCAGCTCGAGCTGCTCTGCTCACTATACGGCCCACTTCTGAGCCATGGCG
Seq A exon
GTACGTGCTTTGAACACCAACACTTGGGAGGCAGAAGCAGCTGGAGCCTGTGAGGCGGGTCTGAGCTACATAGTGAGCGAGTTCCATAGGGACACTGTCTCAAAACAGATGGCCCGCTTCCCACAATACCTCTTTTGTATTTTCTCTATAAACGGTGCTTTAAAATGTGTTAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCTAGGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGGAAAAAAAAAAAAAGAAAAAAAGAAAAAGAAAAAAAATGTGTTAAGTTCTCTTTTTCGCTTTAGCTGTCAATGGTTTGTCACGCAG
Seq C2 exon
GTGTCGGTGATGTTCAGCGATGTGTCCGTAGTCTTCTCGAAGGAGGAGTGGGACTGCCTGGACTTAGACCAGAGGACTCTGTACAGGGATGTGATGATGGAGAATTACCACAATGTGCTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053115:ENSRNOT00000079257:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAGCTGAAAGCCATGGC
R:
AGAGCACATTGTGGTAATTCTCCA
Band lengths:
302-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]