HsaINT0185633 @ hg19
Intron Retention
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24167854-24169917:+
Coord C1 exon
chrX:24167854-24167911
Coord A exon
chrX:24167912-24169807
Coord C2 exon
chrX:24169808-24169917
Length
1896 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TATTTTTTATTTTGAGACAGGTT
3' ss Score
3.69
Exon sequences
Seq C1 exon
AGAGAAAGGCCGGCCTGCAGCACCCGCCACCGTCGCCGGCCGCCCGCACGTCCGTCCG
Seq A exon
GTGAGTCCCGGGTGCCGCCGCGGCCGCGGGGCCTAGTGCGCGCACAGCGGCCTGGTCTCGGCCTGGTCGGCGGCCCGCAAGGCGCCCTCCCGCGCTAGGCCGGGCGGCGTGGCGCGCGGCGCCGAGCAGGCCCCGAGGAGGCCGCAGTTAGGCCCGGGGAGGAGCCCGGCTGCCCCGAGCGGCGGCGGAGGCGCGCTCCGTAAGCGGGCGGGGGTTGGGGGAGGGTCGCCCGGTTGTGCCGGAGGCGGTCGAGGGGCCCCGGGTCGGCTCCGCGGCCGACCTGGGGCACCGCGCCGGGGTGAGGCCTGGCGAGGAGGCGAAGGCTGCAGGCGTGAGGTGAAGGCCGCAGGCCGGCCGGGCCGATTTTCGCTATGTAAATATCGGTGAGGGGGGGGGAGGGACGGGGGACAAGATGGCGGCGGCTCGGCGCCTGCTGCAGGGGACGATAGAGGGGGTTGCCGGGAGGGGGAGCCGCCATCTTGGAGGCGGTGTCTGGAGAGAAAATTCCGCTACAGCCCGTGAGGGGGGGTGGGAGAGCGGGCGGCGGCGGCAGCGGCGCCGGTGACGGGCCCCGGAGGCCCGGCGCGGCGGCGTGTGCGCGCGGAGGGGCGTGCTCGCTCCCCGTGGCGGCCATTGCCCTTGCCGCCATGATGAGCGCTCGGGCTCCAGGCGCTCGGCGGCAGCGCCACCTTCCTGCCTTGCCTCCCGCAGCCCCGTGACTGGCTGCAGTTTCCGCTGCGTTTCAGCTGAGCTGCCGCAGGCGGCCACCGCCGCCGCCCGGACGCCGGGACCGTTTCACCCTCAGCGCCCCTGGCCCTGCGCCTTCCCCCGCGCCTGTAGCCACCCGAGGGCAGTCGGGGCAGGTGGCATTCCGGACACCTGGGCTTACCAGGGCATACGGGACCCCAGGAAATGTTATTTTTGCTTAAGTCAAATCATATGTGGCTGCTAAGGTGCTTTCGATGCAGTTGTTTTTCCAACAATCTTTGCCGCCCCGAGTATCTGAATAAAGGAAGAAAAATAAAGATTGATGGGAAAGTTTTTGCCATTCTTTTGTCCTATAGGGAAAAAAATTGCACAACACGAGAGCGGAGGAATAAAATTTTGAATCATTCGTACTCATTTATGTGGAAACAACTTTCTTGAAAAACGATTTAAGTAGTGATCTGTTGGTGGTATTTTTTTAAATCGAGGAATAAGGGCAGACTTTTTTATTTTCTTATTGGAGGACAACTTAGTGTGGTGCATATTTATTGTGCATTTGCCTGTCATGGTATTTCGATTTTTCATTTGTGAAGTTTTAAGGCGGAGTTTCATCCCCTAACGTACTTTTTTGATTGCACACTGTGCAACTTTCTTGATAAACTCGGAGCCTACTGTTAGCGATGCACCGTGCTAGATGCTAAGAAACATTAAAAAGGTTCTTGTAATGCAGACGGTGGCTGCAAGAAGTCTCATGTTTAGAGGTAGGTGGGGCAAGGTGAAATGCAGTAAAGTGAGAGGTACAACTAATTACTGGGATTTCCGAGGGAAGCAAGGTTGCCATTGGAGGATCAGGGAGGGACGGGTTCCTGAAGTATTAATAGGTGGCATTTTGAGAAGGTTACCGAGGGATGGGTAGGACTTTGTTAGGTAGAGGTGGAGGTGGAGAAAGGACGTTTCAAGGGTGAAGCTTCTTCAGTAAACAGTAAGTATTTACAGTTTGGCAAAAGTGGATGGTATAGGTAGGGGAGTGGTGGGAATTCAGGCTAGAAAAGTTAGATTGCAGAAGGGCTTGCTTGCCAGGTGGAGGGGCTTATACTCAATGGGGTAGGCAGCGGGGGTGCCCTCAACTAGAAGAGTGATGGCACACCTGAGCTGCACCTTGTTATTTACTTATTTTTTATTTTGAGACAG
Seq C2 exon
GTTCTTGCTATATTGCCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCCGTTCTCCCGCCTCCCACTGCCCGCCTGTCACTGCCGTCTGTTCCCTGAGCTGTGCTTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-ZFX:NM_003410:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)