GgaINT0085880 @ galGal3
Intron Retention
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78564017-78568174:+
Coord C1 exon
chr3:78564017-78564138
Coord A exon
chr3:78564139-78568064
Coord C2 exon
chr3:78568065-78568174
Length
3926 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCAAATTTGTGTTTCATAGGGA
3' ss Score
7.21
Exon sequences
Seq C1 exon
CTCTCCCGCTCGCCCCTTCCTCCCTCTCTCCCCCTCTGCCCTCGCCCCGGGCCCGGCCATGTCCTACAACAAGATCCCGCCGCGCTGGCTCCACTGCCCCAGGAGGGGACAGCCCGTGGCAG
Seq A exon
GTGAGCGCCCGGCCGGGCCCCGGCGTGGCTGCGTGGCGGCGGCGGCCCCCGCCGTGCCCGGTCCCTTCCCTCCCCCCCCGGCCCACCCGTTCCCCGTTCTCCGCCCCCGCCGGGCGCTTTGTCCCGGGACCGCGGCACCGCACGGGCCGCGCAGAGTCCCGAGCGGAGACCCGGCGTCGGCGGAGAAGGGAACACCGGGGCGGTGCCGCCCGCTCTCTCCCGGAGCTCTCAGCGCTGCGCTTCCGCTCCGCGGCGAAGTTCGGGGCTGAAACTTCTGCCTCCCGTCACGGCTGGAGGGAACGTGGCGGCTCGGGGCGCCGACAGCCCGTTCGGGGCCCGGCGGGGGCCGTGTGCCTCCCGTCTCCTCCCGGGGAGCGCTCCCGAGCTGGGGGCCGCGCACGGCCGCAGCTCCACGTGCGCCTGAGGCGCCGCCGGCAGTGCCGCCCCGATCTGTGCGCACCCGCTGGGGCGCGGGGTGGGTGTCACGGAAACGCTTTGGGGTTGGGAGTTCATCGCCACAGTGCCCTGAGGCGAATGCCCCCCTAGCATGAGATAGAGCAAGCAAGCCCTTTTCTCACACTTGCTACCTTTATCGGGTAAGCAATTAGAAACCCCTTATTTTTTTCCACAATACCTTCCAGTTTTCGCTCATCCATCTCCCTATCTGTGAGAACTTTGAGTCACTTGTCCGCGTCGTGACGTTTGCTGCTCTGTGTGCTGTGCTGTGAGCCGGGCAGTAGTTAGGTGCCTGCTTTCTCTGTGCCACGCTTCTGCATCATCTCGTTACGCTTCTGTGCCCGCCTTTGGCTGTGGGGCTGCAGACATGAATGGTTGCTTACAAACTTATTTAGAGCTTGCTCAGACATCTCAGGAGCCTCAGTTTTCTCAGCAGTATGTGTTTCTTGCTGTTTATCAGCATGTCATTTCAGCTGCTCATCGTGTGCCTTACTGTTTTCCCTACGTTCTTTGTAATTCCCTGAGCATAACTTAAATAGCATTATCATATTGCTTATCTCCCTTATCTCTTCTCTCTTCCGATCGCTACCAATTGTTTTACTTTGTATCTGTTAGGAATTTGATAGCGTAAGTTGTCAGCCTTTGGCCACAACAAAAAGAGACCCATGAATCTTTATTCTTTGTTTTTCCTCACAGCAAGTTCTTGATCTCCAGAAGTTGTTGGTTTTGTTTGTGTGTTGTTTTTGTTATTTTAAGCCAGGGCTGCTAAAAATAAATGGACAGAGTAAGCACGAATGTAGTTCATCAGCGTGTATGTCATCCGCTGAGCACTGAATGCATGGTCCGTGCTTGTTCAGGAACTGCAAGGTGGCTGTTCTGCTCTGTGCGCTCCGACACAAGGAGTTAGTGCATAAAAGAAAGGGAAGTGTTTGCTTTGTTTCTTTGGCTGCCTCACCGCGATGCATTCTTCCATCAGTTCACTTAATTTTTAGGGATTTTGTGCTTGTGTACAGTTACCAGGAATAATGAACCATCAGTCTTACCTCGTTTTTTATTTGTTATTCTGCTTTCAAACCGTCTAACTGTTTTAGTGAGATATAGTTTTTAGACTTCTCTGATGTTGCTGCTGTCTCCCAGATGCTTTATATTCCAGTTTGGATCAGCTTTTCAAACAAATTTGTGTGCTTCTGTGCATGGCTTCATTCCCTCCTAACAGTGTGTCAGTAATACTGTCACTCAGCAAGCTTTGTCTGCCTTCTGTGGGCTGATAGCCATCACGTGTTTGATTGTGTCCCTCTTCTGCTTGTGGCATCTCTAAGTTCCAGGTGACCTCAAATACAAGAACCAAGGAGGTCTGGATCTCTTCTGTTTGTGAGATTGAGTTCGTTCAGGCTAAGAGGACTGCTATTCTTGAAGGAATAGTGTGCTGCCACTGGTTTTATGAAATGTTTTCACGTTGTATTGCATTGTGGCAGCGGCTCAGCCACACATTTGACAAAAAGAGCTTTCTCTGAACTCTTGGGACTGAAGTTACCAGGTTGCTTCAGCCCTGCTGCCTTGGCGTTTCTGTCTCTGCAGGTACCTACCCTTTATAGCCTCCTGGAATCACATCTGCTTGTTTTTGCTATAGAGAATCTTAGCAAGATACTGAGGAAAAGACATGAGAAGTGTTTCAGCAATGTCCTTCAGCCTGCTGTTGGCTCATGTTAGCTAATCCTCTTCTAGTCTTGCACACTGCATGCAGAGTTGTCAGATATTATTAAAAACATCCGTAAAAAAAACCAAACAACTCAACCCTAAACTTCCAAAGCCATTGCTTTCATAGCCTCATTGGAAAACTTCCCTAATTTGGGATGCAATTACTTGAATTCCCTGCTGTCTTCTAATGTTGGCTGACAACTTGCTCGCTGCCATGCAAGTTCTGTTTCTACGTGGTGATGCCAAACTTCAGTTTGTAGAAGTTGGGCACCTAAATGGTTCCAAAGATCGGAGTCTCAGTATGTTCCCAAGTAGTACTAAATGAAGCCTCTTGAAATACTCAGCACTTCCACAGAGTGAATGGGTGTGTTTGGATGGCAGTGAGGAGTGGTGAAGTGAATTAGAACAGTTCCAAGCATGCTCGGTGTTTTGTTGGATTCACGACAAAGATAAATTTCTGCATTAATATCATCCGCAGTCAGGATTTGGAGAATCAGTCTGGACAGTATAAGCTATGGGTTAATGTGGAAGGAAGGGTTAACAGTGTGAGAAGCTGAATAGGAATGCTGAAAGTGACAGGAGGCGCAACAAACCAACAGAACTAAAACAGGTAGGTCAAACCATGAGGAAATGAAGGAGGGCAGCCAACCCTCACACTGTGGCCGAGGGGGATGGAATGGAAAGGCAGGGGGAAGTAGGTTAATGTGAAGACTGTTTCTGCCAGCCAAGTGAGTTGAAGTGGCTAGGGACTTAGTGCCGTGTGAGGTGTGTGCTCACTGTGTGACCGAATGGCTTTTCTCAGACAAGCTAATGCTGAGGATGCTCCTCACGTTGGCTGTTCCTGCATGATGCTGACCAGCAAGTCACACAAAGCTTCTCTCAGTTTCCTCTCCATCTTCTCTTTGTTTCAGTGGCTCTTTCCTAAAAATTGAATGCTTATTTGAAACTACGCAGGGTGTTTTGTTAGAACTTGAGCCTACAGAGAGCAGTATGAATTTGATGGTTTAAAGAGCTCTCAGCACTCACTTGCATGCTCTTTTAGTGAGATGGGTATGCATTTTTCCATTTTTATGAAGATGAATGAGCTTCTCTCTCAGAAGCTGATTTCTATCTGGATGTCTTGATTCTATCACTGTTGTCATTCCACATGGTTTTGTTTGGGGGAAGGGGTCTGCCCACAGCTCGCTGAGCTGGGCAGGGAGCATCGGACATCCCAGCGGGTTATTTCACGTGTTCTGTGATAGGTAGGATGGATGGAAAGATGAAAGGAATACTGGAAAATCTTGTGTTCTTAGTGACTGATGGGTAAGTGCTAATTCCACTCAAGTTTCTGTCACGGTTCTGTCACAAACACAATGTCTGAGCTGCACACGGGCCCTGTGCTTTGAAGGGATGACTGCATTCCTCCACAGGGCCCCAACAGCTTCTCTGGGCCAGGCACGTCGGGTGGCAAACTGACCTTTCAGATTGGCTTTTTGTGTTTTCTACTGTACTGAGTGTAAATGTTGTGTGCTGTAGCCCTGCAGCCTGACCCATGCTAAAAACCAGCTGAAACACAGGGAGCTGTGTTTCCCTCTTGACTTATTTGTGTGGCATTCTGCGAACTCAGAGCTAGGAAAAGTTTCCAGTTAGTTGTTGATACTTTACCCGCAGTTACTGTTCATTGTAGAAGAACCTAGGAAACTGCTTGGTGTATTGCTCTGAAATCACTAAGTTGCAAGTGCATATATACATCAGTATGCATACAATACTGCCAAATTTGTGTTTCATAG
Seq C2 exon
GGAAGTTTTTACCTTTGAAGACAATGTTAGGACCAAGATACGATGATCAGGTTGCAGAAGAAAATCGTTTTCACCCAAGTATGTTGTCCAACTACTTAAAGAGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787:ENSGALT00000025457:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078215=DSPc=PU(9.0=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]