DreINT0128100 @ danRer10
Intron Retention
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1095566-1099230:-
Coord C1 exon
chr20:1098904-1099230
Coord A exon
chr20:1095676-1098903
Coord C2 exon
chr20:1095566-1095675
Length
3228 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CTGATGCTTTTTCTCCACAGGTA
3' ss Score
12.42
Exon sequences
Seq C1 exon
GGTTTTCAGCGAGTAACGCACTGAACCGCGGGACAACGTGCAGAAATACTGTTTACCGGAGAGAAGCGGACGCCTCATGGAGCTCATCTCATAAACCCGAGTCGAAGAGCAGCTTTTCACAGCGCCAAGTTCTTAATAAAGTTGTGACGCGCTCGTTTGGACTGGGCCCAGGCAGCGGGTCGCCGTAGATCCTCCAGCCGCCCGACAAGGCTCGAGCCCCCGGCAGCCGACCGCGGACTTCCCGCTCGGGAATCGGCGGGAGAATGTCGCAAACCGGAGCGCCTCCCCGCTGGAGGAACTGTCCCAGGAGAGGACAACCTGTGGCCG
Seq A exon
GTGAGCATCTCTGGCTGAGTTGTCAACAAAGCTGGATCTGCTAATGCACACACAGTCTCTCTCTCTCAATTCAAACTTGCTTTATTGACACATGTACCGCCACTGTTTACACCAACTGCAGCATACGAACACACACCACACAGTGATGGCCTCTCTCATTGATATAATGTATGAGATTGATAGTAACGTGCTGGTTTTGGAGAGCATAACTCAAGCCTTTAGCTGTGTGCCTGCAGCTTCGTGAACCCGGATTAAAACTCCTAATGCCTTCAGTCTAACAGTAGCTAATGTAGCATTAGCATGTGCTTATTCATAGCACTGGCTGAAAAGCGCTAGCATGGCGCTGCGTCATACGCCAAAAACAACCTAGCGTTAGCTGAATTAATTGTGTTTTAATTGAGGAACATACTCGACACGCCAAACTTGTGTGTTTTGTCTGGTTTTGAATTGAGTGGCTAGTCGGTTTAGCTCGATTCACGCAGGTCAACAGCAGTACGTCACTGTGAGGGCGGAGGGAGGGTGTGTGTGGAATCTACTATGATGTGGGCTTTGCTCATGAATATTAAGTTTGCGTTCGGCCTCCTGATTCGCTGAGATGTGACGATCTAACGAATCATACTATGGCGAAGAGATAGATGATCAATATTCATGAGAAGACGTGACCTTTTACGCGATGGCGTTATTAATATTAACGAGATTAGACTTGATTTCGCCAGTTTAACACTTCAAAAACACGTACCTCTTTTAGATTATCTTTCTTAGTCATACAAGGATGTTTTATTTGGTTTTTATCATGTTGATAAATAAAAATAAATATTTTCCAATACAGAATTGGATAAGCTAAATTGTCTGTAGTGTATGTGTGTGAATGAGTGTGTATGGATGTTTCCCAAAGATAGGTTGCAGCTGAAAGGGCATCCACTGCATAAAACATATGCTGGATAAGTTGACAGTTTATTCCCCTGTGGCGAACCCAGATTAATAAAGGGACTAATCCGAAAGAAAATGAATGAATTTTCTAATACATCTATTTATTTTGCTTGCAAAATTTGTTTTACACAAATAAAAACTTTTTGTCTGTAAAGCCCCTTTTCAAATTTTTGTAAAGATTTAAAATATTATTTGCATACAATCTCTACCTTCAGCAATGTTAAAGCTTTAAAATCAATAACACCGTGTGGATCTTACAGTATTGTCTCTTTCCTATAATACACAGTGGTCTGTATTGTATGTGACCTTTTAATCATCACTGTGACCTTGCTTTAAGATAGATTTAAAGTGATTTTTGTAATTCATATCCCCCCTGGCGTAATCTTTTGTTTCTCTCTTTGTTTTGTTCCGTTGCTGTTGTAGAAGTTCTTTAAAACTTATAAAAGTGATTTTTGCATAACAGCTCCCTTTTAAGACAGAAAGATATACCCCTACATAATTCATAATACATAAAGTTTTAAGCCCCGGTCAGATTACACGATTTTTTTTGTCGGTTACGAAAGTCACTATTACAGATTATGCAAATTTTTTTTTTCTTTGATAGAATCGTGACTTTTTCCCAGAGTTGGGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAAACTTGTTGGATAAGTTGGCGGTTCATTCTGCTGTGGCAACCCCAGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAGAATCGTGACTTGTTGTGGGTAGCTAATGTGCCAGACTACACGTTCCTTCACGATCAGTCATCCTGTGACGTTTACGACGAGCGTAATTTCAGTGCAGTCACAAATGTTGCCAATTGCTATAACAATACAGTTTTAATCTCATTTTCAATATGTTTGTTTATTTAAATCTTATTTTTATCTTAATAAGCACTGATGCTTGCAGACAACTAATAACTAGGTTACATTATTTAAAGGCGCTCATTAGGATAGGATCAAACTTATAATTCCTTTTTAACAGGGGCGTAGCCATTGGTGTGTCGGTGCCTGAAATAGATGCATATATATATATATATATGCATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATATATATATATATATATGTGTTTGTGTGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATATTTATATAACTATATATGTGTGTGTGTATGTGTGTGTTTATTTATATATATATATATATATATATATATATATATATGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTTTATATATATATATATGTGTCTGTGTGTGTGTGTGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATATATATGTGTGTGTGTTTATAACCTATTCCGGTTAAATTAATGATTATGAGAGTGTGTTAGGGGAAAAGAAAACATTTTAATAATTTGTTAATAAAATATTGTAGCATTATTCTCAGTCAGTGGCTGAAAATATGAAGATTGTCGACGCTGCAGACATTTCTTTTCGTCAAGTAGCCAGTTGATTGCTGCGACGCGCTCTTTCAGGGAGGCTGCATGAGAGAAAGCTCATCTCGTTTATTTTTTTTATTTTACAATCGCGCAACTTTGATGTTATTGTGTGTACATATATTTCCATTGTTATATAGACAAGGTTCTAGTATTGCATAAGTGTGGGCATGATTTTACTGTGGTAAAGTGGAGCATTTCTTGGCAAGTTAATGATTTATTATTTAGTAAGTAAATTTCATCATTATAAAATACATTTAAAGAATATTTTAACACCTAATTATTCAGGATTATTTATTGCACCAAAAGTCATGTCAAAGGAACATTAAATGTTCATAAACTTTTAAACTGTTTCATTTGTGTGTAAACGCCTGATGCAAAAATCTTATTTAGGCCTGCTAAATGCATCATGTAATTATGAAAAACTGGTCAGTAATTGAGTGTTTGAGTGTTAGTAAACCATATTTCTGAGTTGTTAAAGGTCTTTAACATGAACATCTCTGATGCTTTTTCTCCACAG
Seq C2 exon
GTAAATTTCTACCCATGAAAACCATGCTTGGGCCGCGCTATGATGATAAAGTCCCTGAGGAGAACCGGTTTCATCCCAGCATGCTGTCCAACTATCTGAAAAGCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261:ENSDART00000040680:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078215=DSPc=PU(8.3=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]