HsaINT0185965 @ hg38
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35095819-35097566:+
Coord C1 exon
chr1:35095819-35095891
Coord A exon
chr1:35095892-35097316
Coord C2 exon
chr1:35097317-35097566
Length
1425 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATA
5' ss Score
3.78
3' ss Seq
TCCCTCTTGTGTTTTTATAGCTT
3' ss Score
10.04
Exon sequences
Seq C1 exon
GAGTATTGTCATAGGCAACAGTCCAGAACTCAGGAGAATGAACTGAAAATAAATGCTGTGTTTTCAGAGAGTG
Seq A exon
GTAATAGAATTATTTAAGTTAGTTATGTTTATTCAGACCAATACGACAGCTGATTCATTCTTTTTTAATGCCTTTGAATATTGCTTTGTTTGTGTTGGGTTTTAAGTCCAGGAGAAGTAACCTGTAAGAAAATGAAAGAGAGGCCGTGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAGGTCAGGAATTCGAGACCAGTTTGGCCAACATAGTGAAACCCTGTCTCTACTACAAATACAAAATTAGCCAGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGATTTGCTTGAACCTGGGAGGCAGAGGTTGTGGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTAAAAAAAAAAAAAAAGAGAAGAAAATCAAAGAGGCTGGGCATGGTGCCTCATGCCTGTAATCCCAACATTTTGGGAGGCCAAGGTGGAAGGATCAGCTTGAGGGCAGGAGTTTGAGACCAGCCTGGGCAACATAGCGAGATCCTGTCTCTACAGAAAATTTAAAAACCAGGTGTGGTGGTGCATGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGGTTTTTTTTTTTTTTCTGAGATGGAGTTTCCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCTGCCACCCAGGTTCAAGCAGTGCTCCTGCCTCAGCCTCCCAAGTAACTAGGATCACAGGCCCGTGCCACCACACCCAGATAATTTTGTTTGTTTTGAGACGGAGTCTCGCTCTCGCTCTGTTGCCAGGCTGGAGGGCAGTGCATGATCTCGCCTCACTGCAGCCTCCACCTCTCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGTCACCATGCCCAGCTAATTTTTATAGTAGAGACGGGGTTTCACCATATTGCCCGGGATGGTCTCAATCTCTTAAACTCGTGATCCACCCACCTTGCCTCCCAAAATGCTGGGATTACAGGCGTTAGCCACCACACCTGGCTAATTTTGTATTTTTAATTGAGATGGGGTTTCACCATGTTGGCCAAGCTGGTCTTGAACTCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCAGGTGGTGAGAGGGTCACTTGAGTACAGGGTGTCAAGGCTGCAGTGAGCCATGATCGTATCACTACACTGCCTAGAGTGCAAAAGAGGGCAACAGAACAAGACCCTGTCTCTAAAAAAAGAAAGAAAGAAAATAAAGGAATGCCTACTTAATTTTGTGTAAATAACAATTTTTTTTTCTCCCTCTTGTGTTTTTATAG
Seq C2 exon
CTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCATCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAAAAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATGCATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056:ENST00000373330:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATAGGCAACAGTCCAGA
R:
TTTGAGCAGTTTGAACAAGTTCTCT
Band lengths:
318-1743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains