BtaINT0164712 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111191757-111192285:-
Coord C1 exon
chr3:111192213-111192285
Coord A exon
chr3:111192007-111192212
Coord C2 exon
chr3:111191757-111192006
Length
206 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATA
5' ss Score
3.78
3' ss Seq
TTCCTGTTTTGTATTTATAGCTC
3' ss Score
8.54
Exon sequences
Seq C1 exon
GAGTACTGTCAAGCCCAACAGCCCAAAACTCAGGAGAATGACCTGAAAATAAACTCTGCATTTTCAGACAGTG
Seq A exon
GTAATAGAATTACTTAAGTTAATCATATTTATTCTGACAAATATGATGGCCAGTTTATTCTCCTTTTTTAGAATCCCCTTGAATAGTGCATTGATTGTTTTGAGTTTCAAGTCCAGAAGAAGTAACCTCTAAAAGATAATGAAAGAATGCATACTTAATTTTATATAAATACTAATTTTTTTTTCCTTCCTGTTTTGTATTTATAG
Seq C2 exon
CTCCTCAGATCACTACAGGCATTCAGCTTTCTCTGGCATCATCTGGCATGAATAAGATGCTTCCTTCAATTTCAACCACAGCTGTTCAGGTTTCCTGTTCTGGTTGTAAAAAAGTTTTTCAAAAGGGACAAACTGCTTATCAGAGGAAAGGTTCTACTGAGCTTTTCTGCTCCACACCATGCATCACTGAATACATTTCATCTGGCAGTTCACCAGCTCTTCCGAAGAGAACTTGTTCAAACTGCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555:ENSBTAT00000061426:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTGTCAAGCCCAACAGC
R:
TTCGGAAGAGCTGGTGAACTG
Band lengths:
298-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]