MmuINT1035864 @ mm10
Intron Retention
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:127058793-127059659:-
Coord C1 exon
chr4:127059510-127059659
Coord A exon
chr4:127059032-127059509
Coord C2 exon
chr4:127058793-127059031
Length
478 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTTTCTTCCTATTTCTCAAGCTC
3' ss Score
7.49
Exon sequences
Seq C1 exon
CACACCACATGTATTCAAGAGCTGGAGGAGGCCAGAAGCTGGGGTTAAATCTCTTGAAACTGGAGTTACAGGTGCTGGGAACTGAACCCAGGTCCTCTGTAAGAGCAACAAAGTGCCCTTAACCAATGAATCACCCTTCTAATCCTAAAT
Seq A exon
GTAAGTCTTAAAATGTTTCTTTTTTAATTGGGAAATCCTGGGTAAACGGGAAGGAAGCACACACAGCACACCATAGCCTGGTGTTCGCTCACACAACACTCCATAGCTTGGTGCTCAGGGCAGTTATGTGGAGGGTCCAGCAGGCTCTCCCTTAATCTGCCATTTTCTGTTGAGTTGGCCAGTTGCCTTGAGTATACTTTGTACATTATGTTCAGTTCTCTATTTTAAAAGAGCATTGTCAAATCCAACAACCCAAAATTCAGGAGAAAAGAAACTCCACATTTTCATACAATGGTAATAGTATGAATCATAACTTGTTTTTGATCAGTCAAATAGCCAAGTTAGTCTGTTTTCTAAAATTGCCTTTGAATATTATGCTATTGTGAGTTCGGTTTCATATCCAGAAGTAGCCTCTAAAATGAAAGGTGTATACTTGTTTTATGTACATGGAAATTCTGTTTTCTTCCTATTTCTCAAG
Seq C2 exon
CTCCACAGTTGACGGTCTTCTCTCCTCTCACCTGACTTGAATAAAATGCTTCCTGCAGTTCCAGGCACAGCTGTTCGACTCTCCTGTGCCAAATGTAAAAGAGTTTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCAAGACTATGCATTGATGGGTACCCGTCACCTGCTGTGTCTCCAGCTCCTCTCAAAAGGATGTGCTTAAATTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872:ENSMUST00000106102:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064679=zf-FCS=WD(100=63.1),PF064679=zf-FCS=PU(27.3=18.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGAGCTGGAGGAGGCC
R:
TGAGAGGAGCTGGAGACACAG
Band lengths:
352-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types