RnoINT0169105 @ rn6
Intron Retention
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145118572-145123861:-
Coord C1 exon
chr5:145123625-145123861
Coord A exon
chr5:145118807-145123624
Coord C2 exon
chr5:145118572-145118806
Length
4818 bp
Sequences
Splice sites
5' ss Seq
TTGGTGCGT
5' ss Score
6.18
3' ss Seq
GTTTCTTCCTGTTTCTCAAGCTC
3' ss Score
6.78
Exon sequences
Seq C1 exon
GGAGCCGGCGTGGTTGTTTGCACTGCGAAACCCGAGTGGGCGCTTCCCGCCGCTGGGTTGGTGATAGATTATCCGTCCTCGTGGAGTCGCTCAGGGCCGCTTTTCCAGAGAGAGGTGGCGTTTTTCCGGTCCTGAGGAGGGTGACGCGACAGGTGGGAAGCCCACAGTGTCGAGAGAGTCGTGACCCCGGCTTCCAGGCTTCTTGGCGTCCTGGCCTCTGTACGGTGACTGAGCTTG
Seq A exon
GTGCGTTTGGTCTCTTGCGGCTTTTTTCTGTAACTGTCTTCCGTTTACACCTGTGGCTCTCTTTCCATTAAGCAGTGTATTTTTCAGACTTAAACAAATTGGGTGTGTTAGTTCTTTCCTTTAATCCAGCATCCGAGAGGCAGGGGATTCTCTTGAGTTCGAATCCAGCCTGGTGCATAAAGTCAGTTCTAGGCCAGTCAGTGCTACTTGACGAGACCTGGTTTAAAAAAATAAAAAACACTGGGCTGGAGAGAGATGGCAGCAAATAGTTTTAACTGTAGGGTTATGTGAGTGAAATTTGCAAGCTAGCACCGGTGGTGGTTGCCCATTTCTTTAATCCTAGCAGGGAGGCAGAAGCAATTGGATCTCTTAGTCTACAGTGCTAGTTAAAGGACACCCAAGGCTAAACAGAAAAAAAAAAATTCTCAAAAAATGGAAAAAGAAAGAAATTTTAGGCCAAAATTCAAAAGGGATTGGGGCAAACTTATAATCACCCCAGTCAGTACAAGGAATTTACGTTAACCCAGATATCAAAAATGGCCATTTTGTGTTACTGTTACATGTTAATGCTTTGAAGATACCTAAATATTTAACATGTAATGTATAATACAGTTAAGTATTTCTCATAATTTTATTATTTTTGTTTTCAGAGTCTCTAAAAAAATCTTCCAGTCTAATCTCCTGAGTGCTGGGATTACAGACAGGAAGCACTACACTTGACAATTTGATTACTTTTTCTCTTATTGGTTGGTATGTGACAAGACTCTCTTTCCTGAGGAGACATGACACACATCTGTTCACCCCAGATAAAGAGCCCACAGCAGACCAGAGTAGCTTGGTGAACCAGTGAGTTTCATTGGAATTACTTACAGGAATATGGATGAGGGGTTACTTACGGGAGCAGAACAGACAGCAGCAGAACCAAAGTGCACCCCAGCATGGATGACAACTCACAAATGCTGGGAACCTGGAACACGCTGCACTGGCCTGTTGAACTGCCAGCAGTTCGGAGAGCGTCCTTTCCTAGTGACTCAGTTGGTCTAGTCTTCAGGTCAGCGGGTCTGATCTCAGAGTTATTTTTGCAGCTTGGCTTGTCTGAGAGTGACTCTGTTTTTCACTCTGGGAGGTAGGGGCCTAGTGAATCTGGTCAGTTTCAGGGATTCCTCGGAGTTATTTTTGAGTTGCTTACCTTTTAAGGAGCTTCCCTGTGGATGAAATGTATCAATCTTGAAGAAACACAACAGGTGTCCAGTTCTTGTTTAACTTTCAGTACCTCTCTCCCTGTAGTGGCCTCCAGCTCCCTTGGTAGATACCTGCTTCAGTCTCCTAGGCCTTTAGCTTTGTATTCTTGCCTCTACACCAGGCTAGTGCGTGCCAGCATACCTGCCTGCTCTGGGTTCCGTAGACTTTATAGTTTCCTTTCATTGGCCCACTGCTTCACTTAGGGAAAATCAGGTTGAGTTTTTCAGTAAGTCAGTTATATCTTTCCATTGATTTAAAGCTTCCTTAATTCCCCTTAGCAGTGTTTTGACTTTAGTTTACAAGACTTGACAACTTTCATTAGGTTTATTTCTGTATTCGGTGTCTACTACTACCCTCAATGGGATGAAACAAAGGACTATCCCATAGTATCCTACATTTGATGAGTATGTCATAGAAAATAGTTATATTTACGATTTTTTAGATTTATTTATTTTTTTATATTTATTTGTTTATTTATTTATTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGTCCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTAAGCCATCTCTCTAGCCCATATACATATATTTACTTTTTTTTGTTGTTGTTCCTATTGCAAAGAAGTAAAATTTGTTATTTCTGGAGCTGAGAATCAGTTAAACCCAAGGCCTCAATCCCCAAACCCTAAAATGTTTAAATATTGACTTTGTTAAAATTAAAGATTCTTTTTTTTTTTTTTTTTTTTGGTCTTTTTTTTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAAATTAAAGATTCTTTAGGGTTTTCTATATACACAATCACAAAATCTAGAATAATGACAAAATTTTACATTAGTCTTTTTTGTTTGTTTTATGAGACAGGGTTTCTCTGTGTAAACCTGGCTGTCCTAGAAATTGCTCTGTAGACCAGGCTGGCCTCAAACTCTGAGATCCCCTGCCTCTGCCTTCTGAGTGCTGAGACTAAAGTTGTGCGCCATCGCCTCCCCCTTTTTGAACTATTTTACTAAAATCTCTGGTACACAAAAGAAATGGTGAAAGAGAAACCTTGTTTGTTTGTCTTAGGGTCTCCCAGAGTAGTTCAGGCTAACCTGGAAGACTCCGCAGCTAAGGCTGACCTTGAACTCTCAGTGATGCTTCTGCCTCTGCCTCCCAGGAACTGTGATTATACCCATGAGCCACCAAACCTAGAACGTCTAAAATATCAGCTAACTTTCATTCCTTGGTTCATTCTTTTTTTTTTTTTTTTATTACTATTATTAACTTGAGTATTTCTTATATACATTTTGAGTGTTATTCCCTTTCCCGGTTTCCGGGCAGACATCCCCCTCCCCCGGGTTCATTCTTTTAAGACAGAGTCTCACTCAGAGATCTGCCCGCCTGTCTCCAAAGGAGAGGGAAAATGTGGGCCACCATTCCCACCTGAAATACTAACTTTCTGTTAAACTGTGATTCAGCCAAATTCCCTTGTAATGTTCTCCTTATCCATGAAGAATACCCTCCACAAGCCCACTGGTTATCTGAATGCAGGCAGTACCAAACCCTGTCTGTTTCATTTAAAGATTACCCTTTATGAATTTGCTCTCGCTTTATAGAGTCTGAACAGTCAGCATTTCCACTCCTGTGCTTTAAATTTTAGAAGTTTAAATTTTATGTGTGTGGGTGTTCTTGCCTGTATGAACAGGTACCCAAGATGGCCTGAGTAGGGTGTGGGATCCTCTGGAACTGGAGTTATGGATGGTATGAACCAACATGTTGGTGCTAGGAATTGTGTCCAGGGCTTTGGAAGAGCCTTCAGTGCTCTGAACCACTGAGCCTTCTCTCCAGTCCCTCTTTCAGATCTTTTTTTTTTTTTTTCTCTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCTTAGGCAAGCGTTCTACCACTGAGCTAAATCCCCAGGCCCCCCCCCCCCCTTTTTTTAAAAGAGTTACTTGAGTAAAAACAGCATAGTAGTCAATCAGACAACTCAAAGAACAATGAACAATTTGATACACAATTTAAAACTTAAGAGTTGGCTTGCTTATCTCCAGCCTTTAGGAAGCAGAGACAGTTGGATCTGTGCGTTCCAGGATACCCAGAGCTTCAGTAAGAAAGGTGGGGGGGAATATTGTTACCTTCAGATTTTTCCAGGAAATATTTTTGGGGTGTGGTTCATTCATTGCTGGTAACTCATTCTAATAGGGAGCGATTGCTGTATGTTTGGTTTTGGTCTGGGGGTGGACAGTGGGTTGAAACTGGGTATCATGTTGCTCACAGTTCCCTTGAACTCCTTATCTTCCTTCCTCTGACTTCCAAGGTCTCCTGTTTTTGGATATATATGTTTGGATATATATATATATATATTTTTTTTTTTTTTTTAATGTAAGGATACTGTGAAGAAAGGGCAAGTGAGACCGCTCAGGGTAAAGGCTCTTGCCTCCAATTCTGATAACCTGTTTGATCCCCAGGCCCTACAAGGTATAAGAAGAGAATGAACTTCTGTAGGTTGTCTTGGTATGTGTGTTTGTACCCTTACCACCACCACCCCCGAAACAAATAAATAAATGAAATAAAAAAAAAAAACCAAAAAACCTTTTTTGAGAACTTGGAAAAATGTCTTGGTGAGTAAAGGTGTTTGCGGTCAAACCTGCCAGCCTGAGATTAATGGCCAAGATGGACTTCCCCACATATGCCATGAGTCATGAGCACAGTCACACACACACACACACACACACACACACACACACACACGCACGCACGCACGCACGCACGCACTCACTAAATGTAATTGTTAGAACTTTCACTTTTTACGTGTGCCTGTGTGAGTTTCAACACACCACATGTATGCGAGAGCTGGAGGAGGCCGGAAGCTGGGGTTGCATCTCTTGATGCTGGAGCTACAGATGCTGGGAACTGAACCCAGGTCCTCTGTAAGAGTAACAAAGTGCCCTTAACCAGTGAGCCACCCTTCTAGTCCTAAATGTAAGTCCTAAGAAAAATTTTTTTAAACAATTGGGAAATACTGGTTGAACGGGAAGAAAACACGCACAGCATTGTACCGCAGCTCGGTGCTCAGGGCAGTTATATGAAGGGTCCAGCAGGCTCTCATTTAATTTGCCATTTTCTGTTGAATTGCCTAGTTGCCTTGAGTACACTTTGTACATTACTTTCAATTCTCTATTTTAAGAGTATTGTCAAACCCAGCAACCTACAATTCAGAAGAAAAGAAACTTACATTTTCAGGCAGTGGTAATAGAATTAAATCATAATTTTGTTTGATCAATCAAATAGCCAATTTAGTCTACTTTCTAAAATTGCCTTTGAATATCATGCTATTGTGGGTTCCTTTTCATATCCCAAAGTATCCTCTAAAATGAAAGGTGCATATGTATGTAAATGAGAATTCTGTTTCTTCCTGTTTCTCAAG
Seq C2 exon
CTCCACAGCCGACATCTCTGTTCTCACCTGACGTGAGTAAAATGCTTCCTGCAGTTCCAGGCACAGCTGCTCAGCTTTCCTGTTCCAGTTGTAGAAGAGTCTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCGAGACTCTGCATCGATGGGTGCCCTTTACCTGCTATGTCCCCAGCTCCTCTCAAAAGAATGTGCTTAAACTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855:ENSRNOT00000064015:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064679=zf-FCS=WD(100=61.5),PF064679=zf-FCS=PU(27.3=18.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]