HsaINT0185967 @ hg19
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35569896-35570370:+
Coord C1 exon
chr1:35569896-35570070
Coord A exon
chr1:35570071-35570157
Coord C2 exon
chr1:35570158-35570370
Length
87 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ATCTTTTTATTAAATCCTAGATT
3' ss Score
6.87
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATTAGTGTCCAGCTGGAAGACACTACCTCTTGCAAAACTTTTTGCAGCCTATCTTGTCTTTCATCATATGAAGAAAAAAGAAAACCATTTGTTACCATATGTACTAATAGCATTTTGACCAAGTGCAGCATGTGCCAGAAGACTGCTATT
Seq A exon
GTAAGTTCCAATTATAACCTTTACAGGGATTCTGATGATTCTGCTTAAATATCAGAGTTTTTACTGAATCTTTTTATTAAATCCTAG
Seq C2 exon
ATTCAGTATGAAGTAAAATACCAAAATGTGAAACATAATCTTTGCAGTAATGCCTGCCTTTCAAAGTTTCACTCTGCTAACAACTTCATCATGAACTGCTGTGAGAACTGTGGCACTTACTGTTACACCAGCTCTAGTCTGTCCCACATACTTCAGATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACAGCATATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-ZMYM1:NM_024772:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(38.5=25.4)
A:
NA
C2:
PF064679=zf-FCS=PD(56.4=31.0),PF064679=zf-FCS=WD(100=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTGCCAGAAGACTGCTA
R:
GGGACAGACTAGAGCTGGTGT
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)