Special

MmuINT0180455 @ mm9

Intron Retention

Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126728519-126731626:-
Coord C1 exon
chr4:126731452-126731626
Coord A exon
chr4:126728670-126731451
Coord C2 exon
chr4:126728519-126728669
Length
2782 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TACTTTTAATCTTTAAACAGAAA
3' ss Score
6.69
Exon sequences
Seq C1 exon
AGACATTTTAAGTCTAAAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTACATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCATGTGTCAGAAGACATCTACT
Seq A exon
GTAAGTTTCCATTTTTTTTTAACATTTAGAAGAATTCTTGTCATTCTGCTTAAATGTCATTTGTTGCTATTGTTCTAGTCTTGGCAGAAATTCCTACCTTTCACATTTTCGTTCTGCTGACAAGTTTCCTTGTGAACTGGTGAAAGCTGTGATTTATAATCTGTCCCACATACTTCAGGGGGAAGAGTGTCCTTACTTGAGTAGTGCAAAGATTACTAATTCATAGAAGCAGGTGAGCAAAAAGAGCTGCTGTCCCGCCAGCTGGTCGGTGAGCGTGCTTGGTGTTATTGGGGAAATCTTTGGCTGATGGCTAATGAACATGAAGAAGGCCTTTGGGTGTCCCCAAGAACAGAGAAGCTAGCCTTGCTTTGTGGACTAAATGAGACAAGCACAGTTACTGGTTTGATCCCTTTTTATGAATTAGAACGATTATTTAGCTTTATCACTACATGATCTTTAGTAATGTGGTGATGCATAATCTTAGTATTTGAGAGACACAGGCAAGCAGATCTCTGAGCTTGAGGCCAGTCTGGTCTGCAGAATGAGTTCCAGGACAGCCAGAACTACAGAGAAACCATATCTTTTTATTATTATTATTATTATTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCGAAAGTCCCCTATACTCCCCCCCCCAAGAAACCATATCTTGAAAAAACAATAACATATAACTCATACTGAATACTTCAGAATATCAAGAAATCAAAATCTGCAGCAACTCCTCTGGTATAACCATGGTCGAGTGTGCCCTGATCCGTTTCCTGACTGCCTGGTGCTGTCAGTGTCTTGAGCTGCCTGCAGAGTATGCCTGTGAGAGCTGGACGGAGAGCTCAGTGGGAGAGCTATTGCTTAGCATAGGTGTCCAGCCCAAGCACATGCAAAAGCAAGGATCCTTCTGTCTGGAAGGGTGAATGGCAGGATGAGGAGCCAGGTGTGATGGCCATGCCTCTAATTGTCAAGTAGATCTCCGTGAACTCATCCTGGTCTGTGTAACCCAAGTTCCAGACCCGCCAGAATTCCTTGTCTCAAAAAAAGCCATATTAATAAAAGACTAAAGTGAAAATTATCCTGTGCTTTCCCCCTGCCCCTGAAATTTCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTAGACCTGGCTCTGTAGACCTGGCTAGCCTGAAATTCAAGAAATCTGCCTGCCTCTGCCTCCCTAGGGCTTGGATTAAAAGTATGTACCGCCATGCCTTCTTTGTTCTTTCTTTATTTTTAAAGATTATTTAGGAGCTAGAAAGGTGGCTCAGCACTTAAGATCCAGAGGACCCAGTTAAATTCCCTTACCCATGTGACGCTCATAATTACCTATAACCCGTAGTCCAGGGATCTGGTGCCCTGATCTAGACACTGCAGGAGCTACATGCACATGGTGCATACATTCACTCAGGCAAAACACTCATACTCGTAAGAAAATTGACAACCTAAGTACAGTCCTCAGGAGCCACATGGTGGAAGGGAAGGGTGAGCTGACTCTGAAGTTGTCTTCTGACCTTCACTTGCATGGAATGAAATCCACACACACATACAAATGAGGAGTTATTTGTTCCCATTTATGTGCATGGGGTGTGTTTACACATCTGTTTAGGTGCCCATGGATGGAAAAGAGGATGTCATATTCTTGGGACAGGAATCAGGGAACTGTATGTAACTCAGCACGGGTGCTCTTAACTCCTGAGCCATCTTCCCAGCCCATTTCCTGGCTGTCCTATCAACATTCTCATCTCCACAGAAAAGAAACGCTGTGTAGTTTTGTTCGTACTGTGTACCAAAAAGCGGTTCTGCTCCACCGTTGCTTTCAGTGATGTAGAAAGATTCGATGGTAAAACTCCTCAGTCTACAGCCTCTCTTTGTCCCGTGCTTACTGAATTTGCTGCCTTCCGCCTCCTGTTTGTATGCTGCTTTCTCACAATAGGATTGTTATTGTTTTCTGGGTGGGGGGTTAATTTTTTAAGACAAGGTCTCTGTAGCCTTAGCTGTCTTGGAGCTCACTATGTTAGGCTGACTTCTGAACTCACAGAACTCTACCTGCCTCTGCCTCCTGAGCTGGAATTAAAGGCGTGATCCACCACACCCAGCTGTGCTTGAGATTCTTTACCGGGATGTTAGCCTAGGACAACAGGTCTCAACCTGTGAGTCTCCACCCCTTTGGAGGTCGCCTATCAGATATTTACATTATGATTGATAACAATAGCAAAATTCCAGTTATGAAGTAGCAATGAAATAATTTTACGGTTGGGAGCTACCATAACATGAGAAACTGTATTGAGTCACAGCATTAGGAAGGTTGAGAACCTCTGGCCTGGAGGGACAGGTATGGCCCCAGGATCGTATGGTAGATACTAAGTACCCTTTTCTTTCTCGTTAGCCCTGGTGCAAGGGCTCATGTCCAAGGAAAAAACTGTAATTCAATTTGTGTTCTTACTCAGTAGGCTTTCGTTGCCTGGGATAATAAACTTCTTTGGTGGCCTCTCTTTTCCTTGAATATACATTATTGCTATTACTGTAGCTATTAAATGGTAGAATAGTTTTCAGATAAGCTTATCAAATTGCCTCATTTGGTTTTTGTAGCCTAGACTCTTCTAGTTTTTTAAGGAAGTGTAAAGAATTGTTATTGTTTATACTATTTCAGCTAAAAGCAGTTACAGTAGCATGCTTAGTGTTTTTAGTATTGTGTGCGTTGTATCAGAAATACGAGTATTACTTTTAATCTTTAAACAG
Seq C2 exon
AAACCGCCCAGAATACTTAGATCTTCCCCGTGCAAATCACTGCAGCTGTCAGATGAGATGATTGCGATTACTAACGACTTGGGGAACGTAGAGGTTTACTGCTCTGCTTGTTCTTCTTCATACAACAGTGCTGTGATGGAGTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872-Zmym1:NM_026670:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF064679=zf-FCS=PD(70.5=52.5)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000050669





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000101705, ENSMUSP00000101708, ENSMUSP00000120772
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:35104770-35110293 
LOW PSI
HsaINT0185968
(ZMYM1)
Human
(hg19)
chr1:35570371-35575894 
LOW PSI
HsaINT0185968
(ZMYM1)
Rat
(rn6)
chr5:145111090-145114360 
ALTERNATIVE
RnoINT0169107
(Zmym1)
Cow
(bosTau6)
chr3:111184498-111186400 
LOW PSI
BtaINT0164715
(ZMYM1)
Chicken
(galGal4)
chr23:4314995-4315726 
ALTERNATIVE
GgaINT0137484
([1])
Chicken
(galGal3)
chr23:4684595-4685326 
LOW PSI
GgaINT0137484
([2])
Zebrafish
(danRer10)
chr17:14753224-14753418 
LOW PSI
DreINT0139541
(si:ch211-266o15.1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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