BtaINT0164715 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111184344-111186613:-
Coord C1 exon
chr3:111186401-111186613
Coord A exon
chr3:111184498-111186400
Coord C2 exon
chr3:111184344-111184497
Length
1903 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTATTTTACTCTCTTAACAGAAA
3' ss Score
10.06
Exon sequences
Seq C1 exon
ATTCAGTATGAAGTAAAATACCAGAGTGTGAAACATAGTCTTTGCTGTAATGCCTGTTTTTCAAAATTTCACTCCGCTAACAACCTCATCATGAACTGTTGTGAGAATTGTGGAGCTTACTGTTCCACTAGCTCTAGTATGTTTCATATACTTCAAATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACTACACATAAGCAG
Seq A exon
GTATGAATAAAGATCACTTCATTTTGAATTTGATTGCATAAGACTCAAGTGAGAAATGGGACAGTTGACTCCCATTAGTTGGCTTGTGAATGTTTTCACCTTAGGAAAATGTGGGGGTATAGATTTTAGTATCATTGGAATTATTTTTAGTTGGTAAGATAATGAAAGAGGTGAAAGAATAGTTCTTTTTTACACAACAGTTCATTATAAAAGATGCATGGAGATTTTCCTGAAGAATCTCAGGGTGATCACCTTACCTTGAGAAAAGGCCAGCAGAAGGAAGCTTATTTATAAACTAGATGGCAACAATAACAATAGCCTGTTGGTCAGTAAGACTCAACCACAGAAATGTTTTTTATTTTTAATTCCATATATTTAATTCTTACACCTCATAAGCAAGGCTGAAAGATGAATCAAGAATGTCGCATGCTTTTCTGAATCAGGAATCCTAGTAGGCAGTAAACCAATGAGAAATAATCCTCTATTTCTGATAGGAGAGCCTTGGATGTGTGGCTCTGAGAACAGAGAAGCTGACGCTGCTCTACTGGATTGAGATGACACAGTTAGTGTTCTGAGTCCCTTTCATGAGGTGGACTGTCACATGTCTTGCATATTCAGATACTGTTTTGAAATACAACTCTATCCCTGTAAATTCTTCCTTAAAAACAAGCAGTTGAAGATGGGAGTCTCAACAAGCCACAATTCAAATAGGTCATCTGGGAACCACAGCTTTTCTGTGGCAGAATTCCCACACCATGAGCGTATCCTCCCTTGGGACCAGAAATGGGAGAACAAAGGGCATAGAACTCTGTCTGAAAACAGTTAATGCCATTCCTTCTTTCTTTCTTTACCCCTCACAGTCAGTAAATAGACCTCCCATTTTAAGAACCTATATTTGAGTACTCAGTTATTCGGCATGTGTGATAGGGTACGACTGATTTGGCTAGATGAGTTAAAAGGCACATCTGACACAATGCCATGCTACATTTAAGGTATTGTATGATTTTGATAATGGAGAAAACCCATACTGTTAGTGAACTGTAGTCAGGAATTAGATTAAGTCTTGGCTTTCCCACATGAGTAATATGTTAATTATATCACTCTTGGTTAATATTAAATATTGGTGAGTTGTTACATTTCTCAAAATATGAAAATTCATACTGATAAGGGACAAAAATAGTAATTTTCAAAATTATACTGTTTTTTGTTACATTGTTCCTTTACCAACATTCTTTCACAGAAAACCTATTATCTGTATTTGTCTTTGCATTTTGTACGCCTAAAAGCTGTTTGATTTCATCACTGTTAGTGTTTCACCAGAAAGAGCAGGTGGTGAACCTCTCGATTTCTATCCTTTTCCTTTGCACACTTAGCTGCTTACAGAATGCACTGTGTTCTGTACCTCTCACTGCTTGTATGTAGCTTTCTTAGAATATGCTTGCAATTTTTACCATGAAGTTAGGCTAGAAAACAGTGATTCCCACAGCATTTTGTAATGTGTATTAGGCACTTTTTTCTGACTCCTTCTTAGCACCAGTGGAAGGCTTTCCTTTAAAGGCTGATGCCCAAGTTGGCATTGGGGAAGGATCTGTAATTATAAGACTTGTGTTCGTTTATGAAGTTGGGTTTGATTTCTTGGAATGAAGAGCATCTTATGACCACTTCATTGCTTGCATATGTATTGTTATTGCTATTAATATACCTAACATAATACAAATAATTATCTAATAGATTAATCAGTTTCCTTTCATTTTAGTCATTACAACCTATAAGGGCCTTTTTTTCTGGTTTTTAAGAAAGCGCAAAAATGTGACTTTGTTGTTATTATAATATTTCGATTAAGCATGGTAGTGGGTATATGTCATAGAGCAAGAATCTGAACATTATTTTACTCTCTTAACAG
Seq C2 exon
AAACCAGCCAAATCACTACCACCTGTTCTTTGCAAATCATTGAAGCCCACAGATGAAATGATTGAGACTACCAGTGACTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCTTACAGTAAAGCTAAGATGGAATCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555:ENSBTAT00000061426:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=52.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTAAAATACCAGAGTGTGAAACA
R:
AGCAGAGAAACAATTAATAGAGCAGA
Band lengths:
327-2230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]