HsaINT0185968 @ hg38
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35104557-35110447:+
Coord C1 exon
chr1:35104557-35104769
Coord A exon
chr1:35104770-35110293
Coord C2 exon
chr1:35110294-35110447
Length
5524 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTATTTTAATCTCTAAACAGAAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATTCAGTATGAAGTAAAATACCAAAATGTGAAACATAATCTTTGCAGTAATGCCTGCCTTTCAAAGTTTCACTCTGCTAACAACTTCATCATGAACTGCTGTGAGAACTGTGGCACTTACTGTTACACCAGCTCTAGTCTGTCCCACATACTTCAGATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACAGCATATAAGCAG
Seq A exon
GTATGAATAAAGACCTATTGTTTCTTCTATTAACTGGCCTATGAATGGTTTCACTCTAGGAAAATGTGGGAAGTAGTTTTTGGTACCCTTTGGAATAATGTCGATAAGTTGATGAAGATGAAATAGAAGGCTTTTAACGGTTTCTTCTTGCATAAGAATTCATGATAAATGCTATATGGAGATTTTCCTAAATAATCTCAGATCGATTATCTCACCTTAAAGAAAAGGCAGGCAGGCTGGAGCCGGTTTATAAACTAGAAATAAGTATAGCAAAAATAACAATAGTCTGCTGGTCAATAAAACCCAAACACAAAAGTATTTTTGTTTTTATTTTTATGTATTTATTTTATTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGGTGAGATGGAGTCTTCCTCTGTCACCCAGGCTGGAGTGCGGTGGCGCGATCTCGGCTCACTGCAAGTTCTGCCTCGCGGGTTCATGCCATTCTCCTGCCTCGGCCTCCCAAGTAGCTGGGACTACAAGCACCCGCCACCACCACGCCTGGCTAATTTTTTGTATTTTAAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCACACCTGACCTTATTTATTTTTTTTGAGACGGAGTCTCGCTGTCTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGGAACTGGGATTACAGGCGTAAGCCACTGTGCCCAGCTATTTATTTTTTTTATTTATTTTGATTTTTTTGAGACGAGGTCTTTGTCAGCCAGCTTGGAGTGCAGTGGCAATCATGGCTCACTGTAGCCTTGACCTCCTTAGCTCAAGTGATCCTCCCACCTCAGCGTCCCGAGTAGCTGGAACTACAGGCACACACCACCACACCTGGCTAATTTTTAATTTTTTTGTAGAGACAAGCTCTTACTATGTTGCCCAAGCTTGTCTTACAACTCCTGAACTCAGCTGATCCTCCTGCCTTGGTCTCCTAAGGTGCTGGGATTACAGATGTGAGCCTAGCCATGTTTTTGTTTTTAATTCCACGTGTTTAACTCTTACACCAAACAATGCAAAGATGAATCAAGAATGTCACATGTGGACAGTCATGGTGGCTTACACCTGTTATCTCAGCACTTTGGGAGACCAAGGCGGGAGGTTCAGTTGAGCCAGGAGTTCAGAACCAGCCTGAGCAACATAGCAAGAACCTGTCTTTAAAAAAACAAACAAAAAATATCACATGCTTTCTCTGAGTCAGTCATAGGAGGAAATAATCCAGTGAGATTAGTATTATTTGTCCCTATTTCTGATAGACAAGCTCTGGGTGGGTGCTTCTGAGAGCAGAGAAAGAGCAAATGAGATGAGGTGGGACTTCTTAGATATGTTGCTTGTTCATATCATATTTTGAGACCCAACTCTATCCCTATACAGACTTCCTTAAAAACAAGCAGTTGGCCGGGTGCAGTGGCTGATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCTGGCCGATCACCTGAGGTCAGGAGTTGGAGACCAGCCTGGCCAACATGGCGAAAACCCGCCTCTACTAAGAATACCAAAATTAGCTGGGCATGGTGGCAGGCGCCTATAATCCCAACTACTTGGGAGGCTGAGGCAGGAAAATCTCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATGGCACCATTGCACTCCAGCCTAGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCAGTTGAAGATGGGAGTCAAAACAAGCCATAATTCAAATAGATCATTTGTGACTCACATCTTTTCTATGGCCCCCATCTTGAGAGTATCCTGCCTTGGGACCAGAACGGAAAGCACAGAAGACTTCTCCCAAAGGCAGGAAATAATATTCCTTTTTTTTTCTTTCTTTCTTTTTGACACTCAATAGGCCTTGTTCTGGGTTGTTTTTTGTTGTTGTTGTTGTTGTTGTTTGTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAAGCTCCGCCTCGCGGGTTCACGCCATTCTCGTATCTCAGCCTCGCGAGCAGCTGGGACTACAGGTGCCCACCACCACGTCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCGGCCTTGTTCTGTTTTTAAAAGCCTATATGCCGGGCACGGTGGGTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCGTTACTAAAAATACAAAAAAAAAAAAAAATTAGCGGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAGAAAAAAAAAAAAAAACCTGTATTGAGTACCCAGTTGTTCAGCTTATGTGATGGGGCAAGACTGATTTGGGTAAACGAGTTAGTTAACAAGCACAGCCTAACACTTTCCCCTTGCATCTGAATGTAAGACATCATGTGACAGTGATAATGGAGTAAATCTACAATGTTAGTGAACTATAATCCAGAATTAGAAAAATGTCCAAATATGTGAATCTAAAAATGGGGTAGCTTTTTATTTTTAAAAAGTGGATTATTAGATGTAATTGTAATTATTTTGGCCATATGTTAATAGAATATATTAAGTTAGCCTTCCCTTATGAATATTAAACTAACTTAATTATAAATGATACCACTATTGGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAACGGGAGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACTCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATAGTGGCACACACCTAATAATCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGGAAGGTAAAGGTTGTAGTGAGCCGAGATCATACCACTGCACTCCAGCCTGGACAACAGAGCAAGACTCTGTCTCAAAAATAAATAAATAAATAAAAATAAATTATGCCACTATTGTTGCTTAACGTTAAAGATTAGTGAATTGTTAAGATTTCTCAAAATATAAAAGTTGTTCATACTAATAAAGGATAAAAATAGAAATTTTCGAAATTATCCTTTTTGTTTTGTTGTGCCTTTGCCAATATCCTGTTCTCTCACAGAAAAATAAAACGTATATGTATTTTTTTGTCTTTGTACTTTGGTGGGTTTTGTTTTGTTTTGTTTTTGTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGCGTGCAATGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTTCCATCTCAGCCTCCCAAGTAGCTGGGGTTACTTGGGCGCACACCACCACACCCAGCTAATTTTTGTATTTTTGTAGAGACGGGGTTCCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGATGATCTGCCCGCCTCGGCCTGCCAAAGTGCTGGGATTACAGGTGTGAGTCACCGTGCCCAGCCTGTCTGTGTACTTTGCATCTCCAAAAGCAGTTTTGTTCCATCGGTGATTTTTTTTTTTTTTTTTTTTTTTTAGACTGAGTCTTGCTTTTCCACCCAGGATGGAGGCTGGAGTGCATGGTGTGAGCAAAGCTCACTGGAGGCCCAACCTCAGGTGTTCAAGCAATCCTCCTGCCTCAGCCTCCCATGTAGCTGGGACCACAGGCATGCGCCACCACACCTGGTTAATGTTTGTGTTTTTTGTAGAGATGGGTCTCACTTTGCTGCCTAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCTTCCTGCCTTAGCCTCCCAAAGTGCTGGGATTACGGGCAAGAGCCACCACACTGAGCCTGATGTATTATTTTTTCTTTCTTTTTTTGAGACAGAGTCTTACTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGTCTTCCTGGGCTCAAGTGATCCTTCCCACCTCAGCCTCACAAGTAAATGGGACTACAGGCGCACGCCACCACACTAGGCTAATTTTTTATTTTTATTTATTTATTTATTAGAGATGAGGTATCACTATTTTACCAGTCTGGTCTCAAACTCCTGGGTTCAAGTGATCCCCCCGCCTCAACCTCTGAAAGTTGAGATTACAGGCGTGAGCCACTGTGCCTAGGCTCTGACATATTCTGAAATCCAGGAATATTGGTTCCTGTTTGACTAGAAAGAATAGGTGGTGAGCATAATCTTTACAGTAATGCCTGCCTTTCAAAGTTTATATCCTTTCTTTTGCATGGTTACTACTTACTGAACTCACAGTACTCTATACTTTCTATTGCTTGTATGCTGCTTTCTTACAATATGCTTGTAATTTTTACCATGAAGTTAGCCTAGAAAAACAGTGATTCCCACAGTATCTTGTAAGGTATTTAAGTTAAGCACTCCTTCCTGGCTCCTCCTCAGCATCGGTAGACATCTTCCCAAGTTAATTCCCAAGCTACCATTGAGGACAGATCTATAACTATATAAGGCCTTTGTTTATCCAGTAGGCTTTGACTGCCTGAAATGAACTTCTGTGACCACTTTCTTCATTGCTTTTTTTTTTTTCCCTTGAAAAGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGTCACAATCTCAGCTCACTGCAACCTCTGCCACCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAACTGTGATTACAGGCGCTCGCCACTACACCTAGCTAATTTTTTGTATTTTTAGTAGAGACGGGATTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCTTTGGCCTCCCAAAGTGCTGGGATTACATGCATGAGCCACTGCACCTGGCCTTACTGCTTTCATAGGTATTATTATTATTGCTGTTAAATATATCTGATAAATAATAAAAATCATTTTCAGATTTGCCAATATTCTTTTAGTTATTGCAATCTGTAGTGTCTTTTTAAGAAAATGTAAAAACTGTCTTAATTGTTATTCTTTTTAATATTCCAACTAAAAGCAGTGGTAATAGGTTCTTCTTCATTAACAACATATCATATACCAGGAATATGAATATTATTTTAATCTCTAAACAG
Seq C2 exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056:ENST00000373330:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(56.4=31.0),PF064679=zf-FCS=WD(100=52.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains