RnoINT0169107 @ rn6
Intron Retention
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145110939-145114535:-
Coord C1 exon
chr5:145114361-145114535
Coord A exon
chr5:145111090-145114360
Coord C2 exon
chr5:145110939-145111089
Length
3271 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TATTTTTAATCTTTAAACAGAAA
3' ss Score
7.1
Exon sequences
Seq C1 exon
AGACATTTTAAATCTAAAGGATATGAAGAGCGTCCGATTGGAGGATAGCAGTTGTAACAAAAACTTTTGTAGCCAGTCTTGTCTTACATCATATGAAGAAAAACGAAAGCCATGTGTTACCGTATATACTGAGAGCACTTTGCCTAAGTGCAGCATGTGTCAGAGGACATCCACT
Seq A exon
GTAAGTTTCTATCGTTTTTAACATCTAGAATTCTTGTCATTCTGCTTAAATGTCCTTTGTTGCTGTTGTTTTAGTCTTTGCAGTAAAGCCTACCTTTTACATTTTTATTCTGCTAACAAGTTCCGTTGTGAACTGGTGTGAGAGCTGTGGTCTCTAACCTGTCCCACATACTTCAGGGGGAAGCAGTGTCCTTACTTGAGTAGTGCAAAGAATACTCACGGGTAGAAGCGGGTGAGCAGAAAGAGCTCTGTCCCCAGCTAGTCCGTGTTTGCTGTCATTGGGGAAACTCTTTGATTGATGGTTAATGAACATGAAAAAGACATTTGGGTGCTCCTGAGAACAGATAAGTCATCCTTCTTTTGTGGACTAAATGAGATGAACACAGTTTATGGTTTGATACCTTTTTATGAATCAGGATGAATATTTATCTTGATTGTTACATGATGTTTAGTAATGTAGTAATACATAATCCTAGTGTTTGAGAGACATAGGCAGGCAGATCTCTGAGTTTGAGGTCAGTCTGGTCTACAGAGTGAGTTTCAGAACAGCCAGAACTACAGGGATAACCGTATCTTGAAAAACAATACTATATTACTCATACTGAATACATCAGAATATCAAGAAATCAAAATCTCTAGCAACTCCTTTGGTAACCATGGTCGAGTGTGCCCTGATTCTTTTCCTGACTAGATGACATTGTCAGTGAGGCTGGTGCCGTCAGAGTGTCTTGAACTGTCGAGTGCTACCTGCAGAATGTGTCTGTGAGTTGGAAACACAGCTCAGTGGTAGAGCGTATTGCTTAGCATCTATGTTCAACCCCTAGCATATGCAAAAGAAAGGGCCTCTGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAGAAAGGGACTCTCTCTGTGAGCAGAATTCAGGAGCATTTTATGTTTTACTAACAGGACGAGGAGCCAGGTGGTCTGGAGGCAGAGTCAGGCAGATCTCAGTGAAGTCAGCCAGTCTGTATAACCAAGTTCCAGACCAACCAGAGTTACTTGTCTCAAAGAAAAAAAAGTCATATTAATAAAAGACTAAAATGAAAATTTTCCTGTGCCCCACCCCCTCTAAATTTTCAAGACAGGGTTTCTCTCTCTGTGGCCTTGGCTAGAACTGTCTCTGTAGAACAGGCTAACCTGAAACTCAAGTTTAGTTATTAGATTTAAAGTGTGTACCACCATGCCTGGCTTGTTCTTTCTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCCCCACCCCCTCTAAATTTTCAAGACAGGGTTTCTCTCTCTGTGGCCTTGGCTAGAACTGTCTCTGTAGAACAGGCTAACCTGAAACTCAAGTTTAGTTATTAGATTTAAAGTGTGTACCACCATGCCTGGCTTGTTCTTTCTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCTTTCTTTTTTTTTTAAGATTAATTTATTTAGGAGCTGGAATGATGGCTCAGCACTTAAGATCCAGGGGGTTCAGTTCGATACCTAGTGCCTGTATGATGCTCATTAACTACCTAGAACCCTAAGTCCAGGGATCTGGTGCCCTCTTGTAGATACTGCAGGAATTGCATGTAAATGGTGTGTACATACATTCAAGCAGAACACTCATCCATAAAAAAACCTGACAACCTGAGCACAATCCTCAGGACCCACGTGGTAGAAGGAAAGAGTGAGCTGACTCTGACTTGCACGAATGATATTGTACATTCCCATACACATGCAAATAAATAAATAGAACTTTGGAGGATTTCTTTGTTTCCACTTATGTGCATAGGTGTGTGCTTGCACATTTATGCAGGTGCCCATGGAAGCAAAAGAAGGTGTCATATTCTTGGGGCAGGAATCACAGGGGATAGATAGTACGTGACTCAGCACGGGCACTCGGAAACTACCTGGGTCCTCTGAAAGAGCAGGAAGTGCTCTTAACTACGGAACCATCTTTCCAGCCAATTTCTTGCCTCTTCTATTGATATTCTGGACTCCACAGAAAAGAAACGCTATGTATTTTTAGTTTTTTTGCACTGTGTATCAAAAAGCAGGTGTGTTCCACCGTTGCATTCAGTGATATAGAAAGACGAGGGTGAAACCCTCAGTCTACAGCCTTCCCTTTGTCCCCTGTTCTTACTGAACTTGCTGTGTTCTGCTTCCTCTTTGTATGCTGCTTTCTCACAATAGGAATGTGTTTGGTTTTCAGGGGGAGAGGTGTTAATCCTTTAAGGCAAGGTCTGTCTATGTAGGCTTTGCTGTCCTGGAGCTCACTATGTAAACTAGGCTGGCCTCTGAACTCATAGAGCTCCACCTGCCTCAGCTTCTGAGCTGGAATTAAAGGAATGCACCACCACACCCAGCTATGCTTGTGATTCTACCCTGAACTTAGCCTAGAGCAGCGGTTCTCAACCTGTGGGTTCTTGATCCTTTTGGAGGTCATATTTCAGTTATCCTATATATCAGATATTTACATTATGATTCATAACAGTAGCAAAATTCCAGTTATGAAGTAGCAATGAAATAATATCGTTGGGAGTTACCACAACGTGAGGAGCTATGTTAACGAGTCACAGCAGTAGGAAGGTTGAGGACCTCTTCCTAGAGGGATAGGTACTGCCCCGGTATCCTATAGTAGATATTAAGTACCCTTTCTTTCTCATTAGCCCTGTGTGCAAGGGCTCATATTCAAGGACAACACTACTCTGCATTCTTACTCAGTATGCTCTAGTTGCCTGGGATAATAAGCTGCTTTGGTGGCCTCTCTTTTCATTGCCATTACCGTAGCTGTTAAATAAGAGTAGTTTTCAGATAAGCTTATCGAATTGCCTCATGTGGTTTTGTAGCCTGTACTCTGAAATGTAAAGAATTGTTACTGTTTATAATATTTCAGCTGAAAGCAGTTAAAGTGTTTTTAGTATTGCATATGATGTATCAGAAATATGAATATTATTTTTAATCTTTAAACAG
Seq C2 exon
AAACCACCCAGAATACTTAGATCTTTTCCTTGCAAATCACTGAAACTATCAGATGAGATGATTGTGATTACTAATGACTTGGGGAACCTAGAGATTTTCTGCTCTGTTTGTTTTTCTTCATACAACAGTGCTGTGATGGAATCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855:ENSRNOT00000064015:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]