HsaINT0185971 @ hg19
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35577688-35581455:+
Coord C1 exon
chr1:35577688-35577731
Coord A exon
chr1:35577732-35578577
Coord C2 exon
chr1:35578578-35581455
Length
846 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTTCTCATTTTCTCCCAAAGCTT
3' ss Score
8.46
Exon sequences
Seq C1 exon
ATACAGTTTCTTCAGTAACAGCAACAGCAGATGTCATTGTGGAT
Seq A exon
GTAAGTTTTAACTTTTTTTACCACTGTCTTTTTTTAATAAGCAGATTTTTGTTGTTGTTGTTGTTGAGACAGAGTCTCGCTCTGCCACCCAAGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTTTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACCAGCGCCTGCTACCATGCCCAGTTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCACCATGTTGGCCAACCTGGTCTCGAACTGCTGGCCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCTGGCCCAGATTTTTTATATATATATATAATATATACTATAATATATAAAAATATAAATATATAATATAAATATATTATAATATATTGTATATAATATAAATATATTATAATGTATATTTATTATATATTATATTTATATATTTAATATATATTTTATGTATTATGTATTCATATATGGGGTGTGTGTGTATGTTTGTAGATTGTTTAAACAGAAGTATTTTTTTCCTCTGGGTTCTTCTTTTAAAAAAATACTACACAATTTGAGTCATCTGAGCAATAAAAATTATTTTTATGACAATTACATACCAAAAGGTCCTTCAAACATTTAATGCTGAATCTAGATTGCAAATAAATAAGTTATACGTAATTGTTAACGTTTCCCCCTAGTGGAGCTCATACTGTAACTCAGCCATTTATTTTACTATGTTATTAGAGTAGATATATTTGATATTTTAATTAATTTTTGAAAACTGTTAAATGTTCTTTTCTCATTTTCTCCCAAAG
Seq C2 exon
CTTTCTAAGAGTTCACCTAGTGAACCCAGTAATGCTGTTGCTAGTAGTAGTACGGAACAGCCAAGCGTTTCACCATCTTCATCAGTATTCAGTCAGCATGCAATTGGTTCCAGTACAGAAGTACAAAAAGACAATATGAAATCTATGAAAATAAGTGATGAACTATGTCACCCAAAATGTACATCCAAAGTACAAAAAGTTAAAGGTAAATCACGAAGTATTAAAAAATCTTGTTGTGCAGATTTTGAGTGTTTGGAAAACAGTAAAAAAGATGTGGCATTCTGTTATTCATGCCAGTTGTTCTGCCAAAAATATTTTAGCTGTGGAAGAGAGTCATTTGCAACCCACGGAACTTCTAATTGGAAAAAAACCCTGGAAAAATTCAGAAAGCATGAAAAAAGTGAAATGCATTTGAAGTCATTGGAATTTTGGAGAGAATACCAATTTTGTGATGGAGCTGTCAGTGACGATTTATCTATTCATTCGAAACAGATTGAGGGAAATAAAAAGTACCTAAAGCTTATAATTGAAAATATTTTATTTCTTGGAAAGCAGTGTTTACCCTTAAGAGGAAACGACCAGTCAGTTTCATCTGTGAATAAAGGCAATTTTTTAGAATTGTTAGAAATGAGAGCAAAAGATAAAGGAGAAGAAACATTTCGACTTATGAATTCACAAGTTGACTTCTATAACAGTACACAAATTCAAAGTGATATTATCGAAATAATAAAGACTGAAATGTTGCAGGATATTGTGAATGAGATCAATGACTCCTCAGCATTTTCAATCATATGTGATGAGACAATCAATAGTGCCATGAAAGAACAGCTTTCAATTTGTGTAAGATACCCACAAAAATCATCAAAGGCTATCTTAATTAAGGAAAGATTCTTGGGTTTTGTTGATACTGAGGAGATGACTGGGACCCACTTACATAGGACTATCAAAACTTATCTGCAGCAAATTGGAGTTGATATGGATAAAATACATGGCCAGGCCTATGATAGCACCACTAATTTGAAGATAAAATTTAATAAAATAGCAGCAGAATTCAAGAAAGAAGAACCAAGAGCTTTATACATACATTGTTATGCACACTTTTTGGATTTATCAATAATTAGGTTTTGTAAAGAAGTAAAAGAACTCCGAAGTGCTCTAAAAACTCTCAGTTCTTTGTTCAACACTATTTGTATGTCTGGGGAAATGTTGGCAAATTTTCGAAACATTTATAGGCTAAGTCAAAACAAAACATGCAAGAAACATATATCACAATCATGTTGGACAGTCCATGATCGTACATTACTATCTGTGATTGACAGTCTTCCAGAGATTATTGAAACATTGGAAGTTATAGCAAGCCATTCTTCAAATACAAGTTTCGCCGATGAATTGAGTCATTTGCTGACATTGGTTTCCAAATTTGAATTTGTCTTTTGTTTGAAATTCCTGTATCGAGTGCTGAGTGTTACAGGAATTCTTTCCAAAGAGCTTCAAAATAAAACCATAGACATTTTTTCTTTGTCTTCAAAAATAGAAGCAATTTTGGAATGTTTATCATCTGAAAGAAATGACGTATACTTTAAAACAATCTGGGATGGAACAGAGGAAATATGTCAAAAAATAACCTGTAAAGGTTTTAAAGTTGAAAAACCTTCTCTTCAGAAAAGAAGAAAAATTCAGAAATCAGTAGATCTTGGCAATTCAGATAATATGTTTTTTCCTACTTCAACAGAAGAACAATATAAAATTAATATCTATTACCAAGGATTAGATACTATATTACAAAATTTAAAGTTATGTTTTTCGGAGTTTGATTATTGCAAAATAAAGCAAATTTCAGAACTGTTATTTAAATGGAATGAACCATTAAATGAAACAACAGCAAAACATGTTCAGGAATTTTATAAACTTGATGAGGACATTATCCCAGAACTTAGATTTTATCGACATTATGCAAAGCTTAACTTTGTCATAGATGATAGTTGCATAAACTTCGTCAGTCTCGGCTGTTTGTTTATTCAGCATGGTCTTCACAGTAATATTCCTTGTCTCTCAAAGCTATTATATATTGCTTTGTCTTGGCCAATTACTTCAGCAAGTACTGAGAACTCATTTTCTACCCTGCCTCGTCTTAAGACATATTTATGTAATACCATGGGACAAGAGAAGCTTACTGGCCCAGCCCTAATGGCTGTTGAGCAGGAGTTGGTAAATAAACTAATGGAGCCTGAAAGACTCAATGAAATTGTGGAAAAGTTTATCAGTCAGATGAAAGAAATATAATACATGCTCATTTGAACTTACCTAAAAGACTTGTATTTCCATTGGGATGTTTTCATTTCAAAATTGTTCAAAATTCAAAAGACACAGAACGATAAACAGTGAAGTCTCCTTCCCTCCTTTAGAACTCATTTTCTCTTCCCAAAAAGTGTTATCTTTTCCTTAAATATCCCTCTAGAGGTATTTTTCCTAAGTGGTATTGTACGGTGTATACTGTTCTTCAGCTTGTCTTCTCTGTGTAACATATTTTTGAGATTGTCCCATGTCGTTACATGAAGAGTTTCTTGATTCTTGGTCTATAATTGCAGATGTTATTGTATGAATGTACCATAATATATTTGAGCAGTCCCTGCTGACATTTTTTTCCTAACCTTTTGCTATTATAAATAATGATTCATTTTATAACCTTTTATATAGGTCACATTGCACATGAGTGAGTTTACTGTAAGCTGGAAATCTAAAGTTAGAATTACTAGGTTAAGATATGTGCATTTTTACTTTTGATAGATATTGGCAAGTTGCCATCTATAAGGATTGTGCCAGTTTACAGTCCCACCCACAATGCATGAGAGTGCCTATTAAATCTTTGTAAGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-ZMYM1:NM_024772:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142911=DUF4371=WD(100=31.0),PF056999=Dimer_Tnp_hAT=WD(100=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAGTAACAGCAACAGCAGA
R:
GCAGAACAACTGGCATGAATAACA
Band lengths:
342-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)