RnoINT0169110 @ rn6
Intron Retention
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145105997-145110117:-
Coord C1 exon
chr5:145110080-145110117
Coord A exon
chr5:145108879-145110079
Coord C2 exon
chr5:145105997-145108878
Length
1201 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TTTACCATTTCTGTCCTAAGAGC
3' ss Score
7.29
Exon sequences
Seq C1 exon
GTACACTTTCTTCTGTACCTACAAATGTCATTGTGAAC
Seq A exon
GTAAGTTTTATCCTGATTTTTTAAAATCTGAAACAGATTTTGTATGTATATGTCTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTTCAGAGCTGGGGACCGAACCCAGGCCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGTGTGTATATGTCTTTTCATACATAGATAGGTTTTTATACACATATATATGCCATAAAGTATTGTGGCTGGAGAGATAGCTCAGCAGTTAAGAACACTAGCTGCTCTTTCAGAGGACCTGGGTTCAGTCCCCAGCCACCCATGAGACAGCCCACAACTGTCTGTGACTCCAGTTTCGGGGGATCCGAGAAGCCTTCTGTTGGCCCCTGCAGGCAGTGGACACACTAGTAGTGCACAGATATACATGCAGGTAAAACATCTACATATGATAAAGAAAACTCTAAAAACCCAAATTAATTTTAAAGTATTGTTACATTTTTATCTGAGGGTCTTTTCTGCTTGTTTCTTTTTTAATTATTATTTAATGTATATGAGTACACTGTCGCTGTCTTCAGACACAGCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGTCATCATGTAGTTGCTGGGAGTTGAACTCAGGACCTCAGTGCTCTTAATCACTGAGCCATCTCTCCAGCCCACAATTAATTGTTTTTTTTTTTTAAAGATTTATTCATTTATTAAATACAAGTACACTGTAGCTGTCTTCAGATACGCCAGAAGAGAGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCACAATTAATTGTTTTTAAGACAATCTCATGGGCTGGAGAGATGGCTCAGCGGTGCTGGAATTAAAGATGTGCGCCCACCATGCCCAGTTTCCTTTTGAATAAATAGTTCTAGTCATCTGAGTAATAGAAATTATTTTTTTGCTGTTATATACCTAAAAATCCTTTAAACATTTAATGCTGAATTTAGATGGCAAATAATTATGTTAATACTGCTTATAGAGAATCCTATACTATAACTCGTTCATCTTACTGTGTTACTGCAATAGATATGTTTTTATTGTTTGAAAACTGCTTAAACAAGTGTTATTTTACCATTTCTGTCCTAAG
Seq C2 exon
AGCTCAGCCAGTGAGTCCAGCAGTGGTGTTGGAAATAGTGTGGACCAGCCAAGCCTCCCCCCGCCTTCCTCTGTGCTCGGTGAGGACAAAGCTGCTCCCAGTGAGGAGGTCCAAAACAACAGTGAGACAAACCAGGATCCTACATATAGCATGACATCCGTGAAAGGAAATGATCAGCCATGTTTCTCAAAGTCTACATCCACAGAACAGAAGATTAAGAGTGAGCCACAGCCTGCTGGAGAGCTGTGGAGCCCAGGTTCCCAGCATCTGCGTCCCAGTACTGCCAATGAGATCGCTTTCTGCTATTCTTGCTACTTGTTCTACCAGAAAAAAGTCAGCTGTCGGAGAGAAGCTTTTGCAACCAAAGGAGCTGCTGCTGACTGGGAGAGAATGCTGGAAAATTTCAGACGGCATGAAGAAAGCGAAGGGCACTTAAAGTCCCTGCGATTTTGGAGGCAATGCCAGTTTCTCGATGCCGTTCCACATAACGATTCATCTGTTTATTCAAAACAGATTGAAGGAAATAAAAAGTACCTACAGCTCGTCATTGAGAACATTTTATTTCTTGGAAAACAGTGCTTGCTCTTAAAAGGAAATGACCAGTCTATTTCGTCCATTAATAAAGGCAATTTTTTGGAATTACTAGAGATTAGAGCAAGAGATAAAGGAGAGGTGTCTCGGCTTATGAGTTCACACATTGACTTCTATAGTAGTACTCTTGTCCAGGAGGAGATTATTGAAATAATAAAGGGTGAAATGTTGCAAGACATCGTGAGTGAGATCAACGCCTCCTCAGCCTTTTCAATAATCTGTGAGGAGGTAGCTGGCAGTGGTGCTGAGAGACAGCTTTCTGTGTGTGTGAGGTATGCACAAAAATTGCCAAGTGCTGTCTTCGTTAAAGAGCGGTTCCTGGGGTTCGTTACTGCTGAGGAGGTGACTGGGGCCCATGTACACAGGCGTATCAAAGCTTACCTGCAGCAGGTCGGAGTTGACTTTAATAAAATATGCGGCCAAGCCTATGATAGTGCCACAAATTTTAGGGTAAAACTGAATGAGGTTGTAACAGAATTCAAGAAGGAAGAGCCAAGAGTTCTGTATGTGCATTGTCATGCACATTTTTTTGAGTTAGCCGTGCTTAGCTTTTGTAAGGAGGTGAAGGAGCTCCGCAGTGCGCTAAACACGCTCGGCTCTTTGTTCAACACTGTCCGTGTGTCTGGAGAAATGTTGGCAAGTTTGCAGACCGTGTGTAAGCTAAGTCTGAATAAGACTTGTAAAAAGCACGCATCGCAGTCCTGTTGGCCAGCCCACGACCACTTGTTACTGGCTGTGACAGACTGCCTTCCAGAGATCGTGGGAATGCTGGAGTCCGTGTCGCGCCACTCCTCAGGCACAGGCGTGGCTGCGGAGCTGGAAGATTTGTTGGCGATGGTTACCAAGTTTGAGTTTATATTTTGTTTGAAATTTCTTTATCGAATACTCAGTATTACAGGGATTCTTTCTAGAGAGTTTCAAAGTGAAACTGTAGACATTTTTTCTTTGTTTTCAAAAATAGAAGCGATTTTGGAGTGTTTATCTTCTGAAAGGAATGATACATATTTTAAAACTATCTGGGATGGAGCAGATGAAATAAGTAAAAAGATAACCAGCAAGGGTTTTGATATTGAGAAACCCTCTTTTCAAAAAAGAAGAAAAATTCAAAGAACAGTAGATCCCTGCAACTCAGAGCATATGATTTTTCCTACTTCAGCAGATGAACAATATAAAATTAATATTTACTACCAAGGTTTGGATACTGTATTAAAAAGCTTAAAGTTATATTTTTCAGAGTTTGACTATTGCAAAATGAAACAAATTTCCGAGCTGTTACTCAAGTGGAATGAACCATTAAATGAAGCCACAGCCAAGCACATCCAGGAATTCTATAAACTTGATGCAGACATCATCCCTGAGCTAAGATTTTACCGGCAGTATGCAAGTCTCAACTTCGTCACACGGAATGGTTCCTTAAGCTTCATTGACCTGGGCTGTCTGTTTATTCAGCACGGTCTCCACAATAATATTCCTTGTATCACAAAACTGTTGCATATTGCTTTATCTTGGCCAATTACTTCAGCAAATAATGAGAAGTCATTTTCCACACTGCCTCATCTTAAAGCATACTTACTTCGTACCACGGGGCAAGAGAAGCTCAGTAGCCTTGCTCTGATAGCTGTTGAGCAGGAACTGGTAAATAAATTGATGGAACCTGAAAGACTCACGGGAATGGTTGAAAAGTTCATTAGTCAAATGAAAGATAAATAAGACAAACTTGCAACTTTGAGCTCAATTAAAAAGAATTCTGTGGTTTTATTAGAATCCTAACGAAGTTTTGTTTGTTGGAGGTTCTTTGAGATAGATAGGGATCTTACTGTGTAGCCTAGGCTAGTCTTGAATTCGTAAGCTCTTGTGACTGACCATCTTACCTCATTTTTCTCTTTTAAAGTATTGCAGTTGACAGATGATGTGTTAGGCACATCTACATTTAACACATTTACTGAGCAACTGCTATATACCAGATAGTATGATAAGTGCAGGAGACAGAGCAGAGAATTAGGAGTCTGGAGTCCAGTTGAACATAGTTTTTTTCTTTTTTTTCCGGACCTGAGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGAACATAGTTTTCTAATATAGAAATCTAGTAAGAAACCAGGCACGGCAGCACACTCCCAGGATCCCACCAAACTCCCCGAGGACTGTGACTTAGTGATAACATACTTACTTCCCTAGAACAAATAAGGTCCTAGATTCAGTTCCCAGTGCCAAGGAAGTCCTGTAATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855:ENSRNOT00000064015:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142911=DUF4371=WD(100=30.6),PF056999=Dimer_Tnp_hAT=WD(100=11.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACCTACAAATGTCATTGTGA
R:
ACAAGTAGCAAGAATAGCAGAAAGC
Band lengths:
346-1547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]