GgaINT0137492 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4678610-4679995:-
Coord C1 exon
chr23:4679958-4679995
Coord A exon
chr23:4678755-4679957
Coord C2 exon
chr23:4678610-4678754
Length
1203 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GTTTATATTTTCCCAAACAGGCT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCAGTCCCTACCGTGACAGCAAAAATAATAGGAGAT
Seq A exon
GTAAGTTTTACAAGAGACTATTTTTCTCACTTTCGTCCAGATTGTATCAATAACAAGTAAAGTATCCAATATTTAGCACCTTAATTTTATAACTATTTTCCTGGTTGTGATTGACTTTTAAAGTTCATCCAGCTTGCAGTTACACACCTTATCCATTTTTAAAAATGTATGCTACAAAAGTTTTCTTGTGTCTGTTAATGGATCGATTTGATGGCTTAGCAAGGCTTATCAAGCTGTGGCTCTTGGGACAGCAGTAGCTCTCAAGCACTTTGTGCATGGCTTCTATACTGAGGGCTAACTTTTGTCACCAGAGGTGGGATGTGATGTCAAAAGGGCTGCTGTGGGAAGAAGGAAACCAGCATGGGCTGCTGGGGCTGATGTTACCAAGCTCTTTCTTAGCTGCTCTTCCCCACTACTTTGTAGTGTGGTAGTGAAGCTATGGGGAACAGCTGTCACTTCTTACATGTGACTAACTCCTCAAGTTCCTGTTCTTGGGCTCTTTGAGGTATGTGGTATACATCTTGGAACTCTCTTAAAGCTAGGAGGATTTTATTATGTGGCTTGTTGTTTCTGGGAAATTGGCATCCTTCCTTTTATCTAAAGGGTAATTTATGGATTAGAGTATGATTTTTTCATAATGAAACAGATCGTGTTGTATGAATGCATGACTGAAAATTACTGCTGGCAGAACACAAAATTAGTACAAGCATAAAAAGTCAGTCTGTGTATAATTAGGAATTGATACTGCCAGCATTTGTGTTCAATTTTTATCTACTCCTTTTCAGTGATTTCATATTGATTTACTAAGGTTTTTTTGAGTGTATATATATCAGCTAGTATTTTTGTCATCAGAAGTATCTTAACATAAGTCCTTTTTTATCAGCAGCAGAATTTTAAGATCAGAAGTTTATAGACGTTATTTGACCAGATTTGGTCAGAAGTTTGTAGAGGTTATATACAAATATCCTCTAAGATCTGTTTTTTGCTTTGCACTGAAATAAATTGATGTGAAGTCCAGAAAACACCAAATGGATTACACCAAAAAACACCAAATAGAAAGCTATTTTATGGTAGCTTTTAAATTTAATTAACAAAGACAGTTTAAAATTGTTCAACATTTCATAGTAGAGGTCAAGTATTAATCTTACAATATCATACTGCAACCAGTACTGACTGTGCCCTCGTTTATATTTTCCCAAACAG
Seq C2 exon
GCTAGTACTCAGACAGATGCCCTAAAACTGCCATCTTCACAGCCACCTAGGCTCCTAAAAAACAAAGCATTGTTGTGCAAGCCAATCACGCAGACTAAGGCCACCTCATGCAAACCTCATACACAAAATAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.544
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCCCTACCGTGACAG
R:
CTGTCTGGCATTCTTTATTTTGTGT
Band lengths:
182-1385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]