HsaINT0186030 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35858248-35859340:+
Coord C1 exon
chr1:35858248-35858285
Coord A exon
chr1:35858286-35859195
Coord C2 exon
chr1:35859196-35859340
Length
910 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTAATTTGTTTTTTTACTAGGCA
3' ss Score
7.55
Exon sequences
Seq C1 exon
GTGCAGTTCCAACAGTAACAGCGAAAATCATCGGTGAT
Seq A exon
GTAAGTTTTATTACTTTTATTGGTATTGTCACTGTATTTATTTTTCATTTTCATACAGTATAAATATGTGTGAACTAATTTGCCCTCCTTCTTTATTATATGAAATAGATTTCATTAGCTCATTTAATCTTTGTTCAGGAATAGGATTTTCTGGCTATTTAAATAGGTCTTTTATGTACTTTAATATCTTTGAATGCTGGCTATGTAGTTACTGAAAGTTTTTCTTTAATTACACAAAATTGAAGTAAATTGTACAGGATTTAGGCCTGAAAGACTTTTGGATGTTTTGTGATGTACTCAGATTATAAATAAAATGTTTATACAATGTAGCTTATCCTCCCTCTGACCCATTACAGATTATACTGTAAAAAAAAATTCTTTTTTTAACCCATTAATATTTTCTGCTTTGTCTCTTAAAAGAAGAAAATAAATAATGAGAAAAACTTCTGACTGGAACAGTGGCATTTCTAAGGTGTTTCTCCAGGTTTCTGGGATAACTTTCACGTTGTCTTTATTCAAGTTACTTAAATGATCATAAGTGATTCTGTTATTCCTAGTTATCTTGAATCTCTCAAGTCCTCTGTGTCTTAATCAGGAAGTAAGAATTCTCATTTTAAACTTAGCCAGCATTGTTATTGATCAGCAGTGTGTTACAATAGAAATAGCATTTTTCTTGGTAAATAGAAATTGTGATTAGAGACATGCAGAGTAATATATAGTTATTAAAACATTCCTTGATTACTATTAATATTTTAGGAGTATTGTATTTCTTATACATTTGGTTGAATATTTACTTGCTATGTCCTCCATGTAATTCCAATATGACATTTCCTTTAATATTATAATATTTCTTATAATTACAATGAGATTTTTAAAAATGTTTTTGGTTTCTAATTTGTTTTTTTACTAG
Seq C2 exon
GCAAGTACTCAAACAGATGCCCTGAAACTGCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACAAAGCTTTATTATGCAAACCCATCACACAGACTAAAGCCACCTCTTGCAAACCACATACCCAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTTCCAACAGTAACAGC
R:
TGTCTGGCATTCTTTGTTTTGGG
Band lengths:
182-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)