MmuINT0180517 @ mm10
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126898296-126899969:-
Coord C1 exon
chr4:126899932-126899969
Coord A exon
chr4:126898441-126899931
Coord C2 exon
chr4:126898296-126898440
Length
1491 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTTTTTTTTTTTTGAACTAGGCA
3' ss Score
9.78
Exon sequences
Seq C1 exon
GTGCAGTTCCAACAGTTACAGCGAAAATCATTGGGGAT
Seq A exon
GTAAGTTAATTTGGTCTTATTATATTTTCATTTATATGTATTACATATAGGTCTGAGCTAATACATTCTATTAAGGTATAGAATTGTTTATGAATACAGTTCCTATTATCTAATCAGGTCTTTATATATCTTTATTTCTTTGAATGCTTGGTAGGTACCTTTATGTAATTAATTACTGAAGGTTTTTTAAAATTATGCATAATTAAAGTAAATGTACTGAGGCTGGTCATGTGATCTTAGAGACTGTTCTTTTTTGTTGTTTTGTTTTTAGAGATTATTTATTTATTTTATGTAAGTACACTGAAGCTGTCTTCAGACACCCCAAAAGGGAGCATCAGAGCTCATTACAGGTGGTTGTGAGTCACCACGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCTAACCCTGGGTATTGTAAATACCCACACTTAGGCCTCCTCACTCCCATTCCATGCTAGTCATACTGTATATAATTTTTTTTTTTTAAAGGATTTTTTAAGATTTATTTATTTATTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGTATATAATTTTTTTCCAGTCGATAATATCTACATTGTCTCTTAAGTGAAGAATAAAGAAAGAAAATAATGAACAGAACATATGATGAAACAGTGATCTTTCTTGAAAATGTTCCTAGCCTCTGGGATAATGTTTTATGTTTGAGTTACTTTTTAATTCTTTTGTGGTGGCAAACTCTATACCCTAGACCTGTAGTTTCAGCCCTTCAAGATTCTTGGACTGATCACAAGTGATTCCATTAATGTTGGTTACATCCTCCAAGTCAGTCAGGAAATAACAGTTCTCATTTAAAACTCCCCCATTGTACTGATGATTATCAGTGTTTTACAGTAAGCTTATTGGTATTTTTGTTTGTTTGTTTTTTCTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGCGTGCGCCACCACGCCTGGCAGTGGTGTTTTCTTGATAAGCAAATACAGTAAGTACATTAGTCAGTTGATAGTTATTAAATGTTCTTTGTTGCTGTCAATATTTCAGGTATGTGATATATATTTATTAGCATATTTATCTTTTGGTTCTGCTTTGTATAGGTTCTGCTTTGTATAGTGATAGGTCTTTTAAAGTTGAAATTCTTATAATTACTCAAAACATTTTGAAAATCCTTTGGTTTCTGATTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTGAACTAG
Seq C2 exon
GCAAGTACTCAAACAGATGCCCTGAAACTTCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACAAAGCTTTATTGTGCAAACCCATTACACAGACTAAAGCCACGTCATGTAAACCACATACTCAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446:ENSMUST00000106108:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTTCCAACAGTTACAGC
R:
TGTCTGGCATTCTTTGTTTTGAGT
Band lengths:
182-1673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types