DreINT0181032 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40508263-40508551:+
Coord C1 exon
chr19:40508263-40508300
Coord A exon
chr19:40508301-40508406
Coord C2 exon
chr19:40508407-40508551
Length
106 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATTCTCACATTTGTCCCCAGACG
3' ss Score
8.84
Exon sequences
Seq C1 exon
CTTCTGTTCCAGCTGCTGCTACAAAAAGTTCAGGAAAT
Seq A exon
GTGAGTTTTTCCGCAAATCATCTGAACAGCTAAAGATCCTTTTAAAGTGTTCATGTAAATCAATGATTCATTCCAGCATTTCAATCATTCTCACATTTGTCCCCAG
Seq C2 exon
ACGGCCAGCACACAGACAGACAGTGTGAAGCCTTCTGCTCCTCCACCTCGAATCCTGAAAAACAAAGCCTTACTGTGTAAACCCTTAAGCCAGAACAAGGGCACTTCCTGCAAACCCAATGTCTGTGACATGGATTCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGTTCCAGCTGCTGC
R:
TGTGAATCCATGTCACAGACA
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]